Leptidea sinapis (Wood White): 126980173
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Entry
126980173 CDS
T09272
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126980173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsin03021
]
126980173
03019 Messenger RNA biogenesis [BR:
lsin03019
]
126980173
Transcription machinery [BR:
lsin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126980173
Messenger RNA biogenesis [BR:
lsin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
126980173
U7-dependent histone pre-mRNA processing factors
126980173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
EPS8_2nd
Motif
Other DBs
NCBI-GeneID:
126980173
NCBI-ProteinID:
XP_050685721
LinkDB
All DBs
Position
5:complement(9389583..9423899)
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AA seq
1111 aa
AA seq
DB search
MSNKYQPTSKAFAEKQLIQWINEAGMSEGNKKAGLLRKIIEVLMHQLSSLIPLYMENVLK
FVNDKTTEVRKIVVGFIEQLSTKHPENIPKIISQLQLLVIDSVIAVQKKAIQAASVVYKN
AIIWICKDNSEDAVKLVWDHISKLKLLVLNLIDSENEGIRTHAIKFLEEVVLVQTPCAEG
NGGLNLDDIPSSYSFVDRQALEEEAEHIFKLLQKFHNSQHISSVNLMTCMTSLISISKLR
PKYLVRVVQALGDLHTTLPPTLSQSQVNSVRKHLKMQLINLVRQTTSNEIIPQLMQLLSD
IGMTQQEINKVVPKEKRNKRFFEVISGEIPAKRLRMDSPQNSQSSDSNSRTEFDDDSQSS
KSSQPTEDSFFEGLNNIENVLNLVMHTLTNHLPNEMPSSFLTLYKPIPNSGSILQKRNLA
KMINSLIKGEHEPSPTPLTDLAAKIPLLSEDDEKLTLKNAVAKLQESTKADRQAEPLESA
VSKLMEETRQDFLKEEERKAKEKEKEQEKLIPPQTPTVPRLKQKVKLLKLQEITRPIPKE
IKERLMIQAVARILHAEKDAAIGGAAQIRAKLIAIFASGFTADIRELVLNYILEDPVSRI
DLGLQWLYEEYAFMQGFNRHPITLQPKVHEKYDMNYSQLLCSLIVQICERGEPLLENSKD
ILLRRIYAEAPLVSEEAVDYLKHLISEDKSAVLALDIIEELCTLRPPRAHKYVAALVCHV
LHPNVEIREIALNSSLKLYKNGSEAVKKVIEKHALLYLGFITLLTPPAELVEGRHTVRVW
TDDMYKLCLNLVMAIFTENEEVLIDVARVYGCAGADAKRCVLRVVEAPLRAAVADVPAFS
PPPPGSNPPPLPSIPRAFAPLLQDCPRGAETLLTRLVHILTEKSPPTPELVSRVRELYAT
RVSDVRFLIPVLNGLTKREILAALPKLIKLNPVVVKEVFNKLLGLTNPNNENLPVSPEDL
LVALHLIDPNKADLKFIIKATAICFAEKQTYTQDVVSEVLQRLAEEPETPVLMMRSVLQA
LTLYPALGSLALNILQLLINREVWTNKVAWEGWVKCCERLGPRAAPVLAALPPHALPSLP
PHLACTLPPQDPSAFPQPVPKPIEPLPPGME
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacaagtatcaaccaacgtctaaagcattcgccgaaaagcagcttatacaatgg
atcaacgaagcaggaatgtccgaaggcaacaagaaagcgggtttgcttaggaaaataata
gaagtgctcatgcatcagttatcttctttaataccattgtacatggaaaacgtgcttaaa
tttgttaatgataagaccacagaagtaagaaaaatcgttgttggttttattgagcaacta
agcacaaagcatcccgagaacatacctaaaattattagtcagttgcaactcctagttatt
gattctgttattgctgtccaaaagaaagcgatacaagctgcgagtgttgtgtacaaaaat
gctatcatatggatctgcaaggataattcagaggatgctgttaaattagtctgggatcat
atttctaagttaaagcttcttgtattaaatttgatagacagtgagaatgaagggatcagg
acacatgcaatcaaattcttggaagaggttgtcttggtgcaaactccatgtgctgaaggt
aatggtggccttaatttagatgatataccgtcatcgtactccttcgtcgacaggcaagct
ttagaagaagaggctgagcatatattcaaattgctacaaaagttccacaattcccagcac
atatctagtgttaacctgatgacgtgtatgacttcattgatatcaatttcgaaactgcgg
cctaaatacttggtgagagttgtacaggccttgggagatttgcacactacattgccaccc
acattgtcgcaatcacaagttaattccgtacggaaacatttgaagatgcagttgataaat
ctcgtgaggcaaacgacatcgaatgaaattatacctcagttgatgcaattgttatcagac
attggcatgacccagcaagaaattaataaggttgtgcccaaagagaaaagaaacaaacgc
ttctttgaagttataagtggagaaataccggcaaaaagacttagaatggattcaccgcaa
aatagccagagcagtgatagcaacagcagaactgaatttgatgatgatagtcaaagttct
aaatctagccaaccaacggaagattcgtttttcgaaggattaaacaatattgaaaatgtt
ttaaatcttgttatgcatactcttactaatcatctgccaaatgaaatgccaagtagtttt
cttactctatacaagcctataccaaactcgggctctatattacaaaagcgcaatctagcg
aaaatgattaattccttaatcaaaggtgaacatgagcccagccccacaccattaacagat
ttagcagcaaaaattccattactctccgaagatgatgagaaactaacactaaagaatgca
gtagcgaaattacaagaatcaacaaaagctgataggcaggcagaacctctagaatcagct
gtctcaaaactaatggaggaaacacggcaggactttttaaaagaggaagaaagaaaggct
aaagagaaagagaaggaacaggagaaacttataccgccacaaactcctactgtgccgcgg
ctaaaacagaaagtgaaactgcttaaactacaggaaataacaaggccgatcccgaaagaa
attaaagaaagacttatgattcaggccgttgctcgtatattacatgctgaaaaggatgct
gctattggtggtgcagcacaaataagagctaaactcatagctatatttgcatcaggtttt
actgcagacattcgcgagttggttttaaattacattcttgaagaccccgtaagtagaatt
gacttgggcttgcaatggttatacgaagagtatgccttcatgcagggtttcaataggcac
ccaataacactacagccaaaagtacacgagaaatatgacatgaattacagtcagctgcta
tgttcgttgatagtccagatatgcgaaaggggagagcctttattagagaatagcaaagat
attctgttaagaaggatttatgctgaggctccgttggttagtgaagaagctgttgattac
ttgaaacatttaatatccgaggataaaagtgctgtattggcacttgacattatagaagag
ctgtgtacattaaggccgccacgtgctcacaaatacgtcgcagcactcgtttgccacgtc
ttacatccaaacgttgaaatacgcgaaatagcactgaattcatcattgaaactatacaaa
aacgggtcagaggctgtcaagaaggtgatagagaaacacgcgctactatacctgggcttc
atcacgctgttaacaccgccggcggagctggtcgagggtcggcacacagtacgggtgtgg
acagacgatatgtacaaactatgtctgaatctggtcatggccatattcacggaaaatgag
gaggtattaatagacgtcgcgcgggtatacggttgtgcgggcgcggacgccaagcggtgc
gtgctacgcgtcgtagaggcgccgctacgagccgccgtagccgatgtcccggccttctcg
cctcctccgcccggctcaaacccccctcccctgccctccataccccgcgcattcgcccct
ctcttacaggactgcccccgaggcgcggagaccttactgacaagacttgtgcatatactc
actgagaagagtccgccaactccagagctggtgtctcgcgtgcgagagctgtatgccacg
cgtgtgtccgatgtccgcttcctgattcccgtcctcaatggtcttacaaaacgagagata
ttggcagccctgccgaagctgataaagctgaacccggttgtcgtgaaggaggtatttaat
aaactgctaggactgacgaatcctaacaacgaaaatcttccagtcagtccagaggacttg
ctggtggctttgcacctcatcgaccctaacaaggcggacctcaagttcatcatcaaggca
acagcaatttgcttcgctgagaaacagacatatacacaagatgttgtgtccgaagtacta
cagcggctagccgaagagccggagacgccagtactgatgatgcggagcgtgttacaagct
cttacgctatacccggcactcgggtcgcttgcgttgaacatcctgcagttgcttattaac
agagaggtgtggacgaacaaggtggcttgggaagggtgggtgaaatgttgcgagcggctc
gggcctcgtgctgcgcccgtcctcgccgcgctcccgccgcacgcgctgccgtcgctgccc
ccccacctggcgtgtaccctgccccctcaggacccgtcagcatttccgcaaccagtgccg
aaacccattgaacctttgccgccgggaatggaatga
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