Ligilactobacillus salivarius JCM1046: LSJ_0341
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Entry
LSJ_0341 CDS
T03340
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lsj
Ligilactobacillus salivarius JCM1046
Pathway
lsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSJ_0341 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsj03019
]
LSJ_0341 (srmB)
03009 Ribosome biogenesis [BR:
lsj03009
]
LSJ_0341 (srmB)
Enzymes [BR:
lsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LSJ_0341 (srmB)
Messenger RNA biogenesis [BR:
lsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LSJ_0341 (srmB)
Ribosome biogenesis [BR:
lsj03009
]
Prokaryotic type
rRNA helicases
LSJ_0341 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AIR10081
UniProt:
A0A089QGI5
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All DBs
Position
374182..375660
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AA seq
492 aa
AA seq
DB search
MKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVL
QQLDLDLRQIQAVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLEQHT
PHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQTLL
FSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLIDVQAP
ELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVA
ARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTK
KRMDPLKPPTQDEAFIGQVSSALDDIKDLIADTDTERYEAQAQALLEQYDAVEVVAAFLN
NMTKKDASDVPVKITPEKPLPRRKKGRRNGNYRRGNDNFKRSKRFNKHDRKNRDNKRRSG
KKNRFTIRTKKA
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttggcgaattaggattagataaaagtttgttaaaggctgtaaagagaagtggt
tttgaagaagctactcctattcaagcagaaacaataccacttgttttagctggtaatgat
gtaattggacaagcacagacaggtaccggtaaaactgcagcctttggtttgccagtatta
caacaattagatttggatttgagacaaattcaagcagtaataatctcaccaactcgtgaa
ttagcaattcaaacacaagaagaactttttcatttaggaaaagaaaaaagagctaaggtc
caagttgtgtatggcggagctgacattagacgtcaaattaagcaacttgaacaacacaca
ccacatattttagtaggaacaccaggacgattacttgatcatattcaaagaggaacaatt
aacttggctcatgttaaacatttgattttagatgaagctgatgaaatgctagacatggga
ttcttggatgatattgaaaagattatccaagcagtaccagctgaacgtcaaactttatta
ttctcagcaactatgcctaaagaaatcttgaagattggcgaaaaatttatggttaatcca
caaattgtaaaaatcaaagctaaagagttaacaacagatttagttgatcaatattttgtg
aagacaaaagaatttgaaaaattcgatattatgactagattgattgatgttcaagctcct
gaattaacaatcgtttttggtagaactaagcgtcgtgttgatgaactttctcgaggttta
gaagcacgtggttacaatgcagctggcattcatggtgatttgactcaacaacgtcgtatg
aacgtattacgtaagtttaaaaatggagatttggatatcttagtagcaactgatgtcgca
gcccgtggtttagacatctcaggagttactcatgtttacaactatgatattccacaagat
ccggaaagttatgttcaccgtattggtagaactggtcgtgcaggacaccatggaacttcc
gtaacatttgttacacctaacgaaatggattacctacgtgttatcgagaaattaactaag
aaacgcatggatccattgaagccaccaactcaagatgaagcatttattggacaagtttca
agtgctttagatgatattaaagatttaatagctgatacagatacagaacgctatgaagca
caagcacaagcactattggaacaatatgatgcagttgaagtagtagcagcctttttgaat
aatatgactaagaaggatgcttctgacgttcctgttaagattacaccagaaaaaccacta
cctcgccgtaaaaaaggtcgtcgtaacggaaattatcgtcgcggtaatgataactttaag
cgtagtaagagattcaacaagcatgatagaaaaaatcgagataataaacgtagaagtggc
aaaaaaaatagatttactattagaacaaagaaagcttaa
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