Ligilactobacillus salivarius JCM1046: LSJ_0688
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Entry
LSJ_0688 CDS
T03340
Name
(GenBank) Metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lsj
Ligilactobacillus salivarius JCM1046
Pathway
lsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSJ_0688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsj03019
]
LSJ_0688
Messenger RNA biogenesis [BR:
lsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LSJ_0688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AIR10382
UniProt:
A0A089RUX1
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All DBs
Position
684519..686216
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AA seq
565 aa
AA seq
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MSDIKIISLGGVRENAKNMYAVEVDDEIFILDCGLKYPENELLGIDFVIPDFSYLRENSR
KIVGVFLTHGHADAIGALPYFVSEFDVPVFGSELTIELAKIACENEEDARKFDDFHVIDE
STEIDFENATISFFQTTHSIPESLGVVIKTENGNVVYTGDFKFDQSAEKGYRTDYARLTE
IGREGVLALLSESANAENPRETVNERAIYDFISENFEYRKGRIIVACVASNILRVQQIFN
AAAANNRKVALTGHDVEKVVKTAMRLNKLVLPKEDLLIPIKKINDYNDDEIVILETGRSG
EPLKSLQKMAMGRHRFVNLHEGDLVFITTTPSHAMETKVARTRDMIYRSGADVKAIFDEL
NSSGHASKNDLQLMMNLVKPRYVIPVQGEYRMLSAHAELARELGIPSENIFLLKKGDVLE
YKKDEMTISSSVEVGNTMIDGTGVGDIGNIVLRDRKILSEDGIFIAVVTIDRKKRKIVDT
PKITSRGFVYIKTSKDLMVESRNIVAKIVQRDLDNKEFDWSQLKQDIRENLNNFLYEQTK
RHPVILPVIMEINQNNHFSKKKKKG
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatataaaaatcatctcgctaggtggggtacgtgaaaatgcaaaaaacatgtat
gctgtcgaagttgatgatgaaatatttattttagactgtggattaaaatatccagaaaat
gaattattaggtatagattttgttattcctgatttttcatatttaagagagaattcacgt
aaaatagtgggtgttttcttaacacacggtcatgcagatgccataggagcgctaccgtat
tttgttagtgaatttgatgtgccagtttttggatcagaattaacaattgaactagctaaa
attgcatgtgaaaatgaagaagatgctagaaaattcgatgattttcatgtaattgatgag
agtacagaaatagattttgaaaatgcaacgatatcattttttcaaactacacattctatt
ccagagtctttgggtgtggttattaaaacagaaaatggaaatgttgtttatactggagac
tttaaatttgatcagtctgcagaaaaaggttatcgaacagattatgcaagattaactgaa
attggtcgtgaaggtgtgctagctttattaagtgagtcagccaatgctgaaaatcctaga
gaaacagttaatgagcgagcaatatatgattttattagtgaaaattttgaatatcgtaaa
ggaagaattattgtagcttgcgtagcttcaaatattttacgagtacaacaaatttttaat
gcagctgcagctaataatagaaaagtggctcttactggacatgatgtagaaaaagttgtt
aaaactgcaatgcgtttaaataaattagtattgccgaaagaggatttactcatacctatt
aaaaaaattaacgactacaatgatgatgaaattgtaattcttgaaactggacgttctgga
gaaccattaaaatcattgcaaaaaatggctatgggtagacatagatttgtcaatctacat
gaaggagatttggtatttattacaactactccatctcatgctatggaaactaaggttgca
agaactagagacatgatatatcgctcaggagcagacgttaaagctatttttgatgaatta
aattcttcaggtcatgcaagtaagaatgatttgcagttaatgatgaacttggtaaaacca
cgttacgtcattcctgttcaaggtgaatatagaatgttgtctgcgcatgcagaattagct
agagaactagggattcctagtgaaaatatctttttactcaaaaaaggtgatgtcttagaa
tataagaaagatgagatgacaatttcatcaagtgtagaagtaggtaacactatgattgat
ggaactggcgttggggatattggaaatattgttttgagagatagaaaaatcctatcagaa
gatggaatttttattgctgtggttactattgatcgtaaaaagaggaagattgttgatact
cctaaaataacatctcgtggtttcgtatatattaaaacaagtaaagatttgatggttgaa
agtaggaatattgtagctaagattgttcaaagagatttggataataaggaatttgactgg
agccaattaaaacaagatattcgagaaaatttgaataattttttgtatgagcaaacaaag
cgtcatccagttattttaccagtaattatggaaataaatcaaaataatcatttttctaag
aagaaaaagaaaggttaa
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