Ligilactobacillus salivarius JCM1046: LSJ_1079c
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Entry
LSJ_1079c CDS
T03340
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lsj
Ligilactobacillus salivarius JCM1046
Pathway
lsj03410
Base excision repair
lsj03430
Mismatch repair
lsj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LSJ_1079c (recJ)
03430 Mismatch repair
LSJ_1079c (recJ)
03440 Homologous recombination
LSJ_1079c (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsj03400
]
LSJ_1079c (recJ)
DNA repair and recombination proteins [BR:
lsj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LSJ_1079c (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LSJ_1079c (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LSJ_1079c (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
DHH
RecJ_OB
DHHA1
RmlD_sub_bind
Motif
Other DBs
NCBI-ProteinID:
AIR10753
UniProt:
A0A089QFZ7
LinkDB
All DBs
Position
complement(1084500..1086833)
Genome browser
AA seq
777 aa
AA seq
DB search
MIDAKKEWQEIELSENEHLDELIEETGFPKIVLQILMERGYDSLEAINNFLDPDARGLYD
PNFMHDMELGVDRIQQAIMNGEKIVIYGDYDVDGITSTALMYETLEELGAEVEYYIPDRF
KDGYGPNVEVYKRLIDEGVSLIVTVDNGVAGHEAIDYANQHGVDVVVTDHHELPETLPDA
YAIIHPRHPEGDYPFGELSGVGVAFKVAAALLEELPQDVLDLVALGTVADLVSLTGENRI
LVKYGLQLLQQTMRPGLQSLYKVAGIEVPTITEETIGFSLAPRLNALGRMENGSLGVELL
TTLDEERAEELAKTTNQLNIKRQEEVSKIVEEAVAQLANKSENHLVNVVAGNNWHEGVVG
IVASRLVDMTGKPSLVLSIDEKTGIAKGSGRSIEAFQMFDALDSHRDILMKFGGHHMACG
LSLDREKLSDLQQVVDEEGKKQGIEHATKPVVKVIPVNLDDVNLDLEAQLEALAPFGTDN
PRPVFEFKDYEVNTVQEIGQQKNHLKLQLQSNNSQVDALDFGIGSKKISEIERNKNSVRL
IGTLGKNVWQSRVNLQIMIEDILLDDSNTGTVVEIQRKNKLTKSMFQQQATYVFFDKKLY
NQVMPYLADDSEAYLYNFSDDKKLNCDTLIVVDCPDNIEKLKSLLAKAIVKHFIFVGYTR
ENTYLNGLPTREQFGRLYKFSQTHTNVNIRRDLQKLADYLKLKRELLVFMINVFFEAKFV
KIENGLMSGNTNVTPHNLEDTNSYQAYLQKMKAQKSLIYSKSTDLQKWILRYLDENN
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgctaaaaaagaatggcaagaaattgaattatcagaaaatgaacatcttgat
gaattaattgaagaaacaggttttcctaagatagttttacaaatattaatggaaagagga
tacgattctcttgaagctattaacaattttttagatccagatgctcgtggattgtacgat
cctaattttatgcatgatatggaactaggtgtagatagaattcaacaagcaattatgaat
ggtgaaaaaatagtcatttatggagactatgatgttgatggaatcacaagtactgctctt
atgtacgaaactcttgaagaattaggagcagaagttgaatattatatacctgatagattt
aaagatggctatggtcccaatgtggaagtctataagcgtttgattgatgaaggtgttagt
ttaattgtaactgtggataatggggtagctggacatgaagccattgattatgcaaatcaa
catggagtagatgtagtcgtaacagatcatcatgagttacctgaaactttgccagatgca
tatgcgattatccatcctcgtcatcctgagggagattatccttttggtgaattatctgga
gtaggtgtggcttttaaggtggcggctgctttactagaagaattaccacaagatgtatta
gatttagttgctttaggaaccgtagctgatttggtttctctaactggtgaaaatagaatc
ttagttaagtatggtctgcaattgttacaacaaacaatgcgtcctggattacaaagttta
tacaaagtagctgggatagaagttcctacaattacggaagagacaattggtttttcactt
gctccacgtttaaatgcattaggaagaatggaaaatgggagtttaggggtagaattacta
actactttagatgaggaaagagctgaagagttagcaaaaactaccaaccaattaaatata
aaaaggcaagaagaagttagtaaaatcgttgaagaagcggtggcacaattagctaataaa
tccgaaaatcatttagtcaatgtagtggctggaaataactggcatgaaggtgtagtgggc
atcgtggcaagtaggttagtcgatatgactggcaaaccttctctagttcttagcattgat
gaaaaaacaggtattgctaaaggctcaggaagatccattgaagcgtttcaaatgtttgat
gccttagatagtcatcgagatattctcatgaaatttggaggacatcatatggcttgtggc
ttgtctttagatagggagaagttgtcagatttacaacaagttgttgatgaagaaggaaag
aaacaaggaattgaacatgctacaaaaccggtagtaaaagtcattcctgttaatttagat
gatgttaatttggatttagaggcacaattagaagctttagcaccatttggtacagataat
cctcgtcctgtttttgaattcaaagattacgaagtgaatacagttcaggagattgggcaa
caaaaaaatcatcttaaacttcaattgcaatccaataactctcaagtggatgccctggat
ttcggaattggtagcaaaaaaatttctgaaattgagcgaaataaaaattcagttcgtttg
atagggactttgggaaaaaatgtttggcaaagtagggttaatcttcaaattatgatagaa
gatattttgttggatgacagtaatactggcacagttgttgagattcaacgaaaaaataaa
ctaactaagtcaatgtttcaacaacaagcaacatatgttttctttgataaaaaactatac
aatcaagtaatgccatatctagctgatgatagtgaagcttatttatataattttagcgat
gataagaagttaaattgtgatacgttgattgtggtagattgcccagataatatagaaaaa
ttaaagtctctacttgctaaagcaattgttaagcattttatttttgttggttatactaga
gaaaatacttacttaaatggcttgccaactagagaacagtttggtagactatataagttc
tcgcaaacacacactaatgtaaatataagaagagatttacagaaattggcagactattta
aaactaaaacgcgaacttttagtttttatgattaatgtgttttttgaagcgaaatttgtt
aaaatagaaaatgggttaatgagtggaaacacaaatgtaactccgcataatttagaagat
acaaattcatatcaagcatatttacaaaaaatgaaagcacaaaaatcgctaatatacagc
aaatcaacagatttacagaagtggatattaaggtatcttgatgaaaataattag
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