Ligilactobacillus salivarius JCM1046: LSJ_1169c
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Entry
LSJ_1169c CDS
T03340
Symbol
uvrB
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
lsj
Ligilactobacillus salivarius JCM1046
Pathway
lsj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LSJ_1169c (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsj03400
]
LSJ_1169c (uvrB)
DNA repair and recombination proteins [BR:
lsj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LSJ_1169c (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LSJ_1169c (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
T2SSE
AAA_7
AAA_19
AAA_22
SKA3_helical
DUF8810
AAA_16
AAA
AAA_25
AAA_5
DUF8353
Motif
Other DBs
NCBI-ProteinID:
AIR10841
UniProt:
A0A089QIT7
LinkDB
All DBs
Position
complement(1178352..1180352)
Genome browser
AA seq
666 aa
AA seq
DB search
MIERQADRNFELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKN
VNKPTLVLAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
NDEIDKLRHSATSSLLERNDVIVVASVSSIFGLGDPHEYREHTISLRVGQEIERNKLLND
LIDIQFERNDIDFQRGRFRVRGDVVEIFPASRDESALRVEFFGDEIDRIREIDPLTGETI
ADREHIAIFPATHFMTNEERLGTAIEGIQQELEERTTELKNEGKLLEAQRLQQRTTYDIE
MLKEMGYCSGIENYSRHMDGRKPGEAPYTLLDFFPDDFLIVVDESHVTMPQVRGMYNGDR
ARKQMLVDYGFRLPSALDNRPLTREEFEKHVNQIIYMSATPGPYEQEKTSHVVQQIIRPT
GLLDPEIEVRPIMGQMDDLVGEINKRVELNERVFVTTLTKKMAEDLTDYFKEMGIKVKYL
HSDIKTLERTEIVRDLRMGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLI
QTIGRAARNASGHVIMYADDVTPSMEAAIKETKRRRSIQEQYNKDHNIIPKTIIKPIRAA
ISISSKVNKSDTNISDTVDFADMSKKEQLEMISNLEEQMREAAKKLDFEEAATLRDTVME
LKAQIS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
gtgattgagcgtcaagcagatagaaattttgaattagtttctaagtatagcccaactgga
gaccagccggaagcaatacaagaattaacagagggaattaaaaaaggtgaaaaagctcaa
attttaatgggagcgacaggtactggtaaaacttttacaatttctaatgtaataaagaat
gttaataaaccaactttagttttagcacataataagacgttggcaggacaattatatgga
gaatttaaagaattctttcctaataatgcagtggaatattttgttagttattatgactat
tatcaaccagaagcttatgttccttctagcgatacttatattgaaaaagattcaagtatc
aatgatgaaatagataaacttcgtcactctgctacaagttcgttattagaaagaaatgat
gtaattgttgtggcttctgtttcatcaatctttgggttaggtgatcctcatgaatataga
gaacacacaatttcattaagagtcggacaagaaattgagcgtaataaattattaaatgat
ttaattgatattcaatttgaacgaaatgacatcgactttcaacgtggacgtttcagagtt
cgtggagatgttgttgaaatctttccagcttcaagagatgagtcagcattacgagtagaa
ttttttggcgatgaaattgatagaattagagaaattgacccattgactggagaaactatc
gctgatagagaacacatcgctattttccctgctactcactttatgacaaatgaagaaaga
ttaggaacagcgattgagggaattcaacaagaattagaagaaagaacgactgaattaaag
aatgaaggaaaacttttagaggctcaaagactacagcaaagaaccacgtatgatattgaa
atgctaaaggaaatgggatattgttctggaattgaaaattattcaagacatatggatggt
agaaaaccaggagaagcaccttatactttattagatttcttcccagatgatttcttgatt
gtagtagatgaatcacatgtaacgatgccccaagttagaggtatgtataatggggataga
gctagaaagcaaatgctggtagattatggatttaggttacctagtgctttagataatcgt
ccattaactagagaagaatttgaaaaacatgtaaatcaaataatttatatgtcagcgaca
ccagggccttatgaacaagaaaaaacatcacatgttgtacaacagattattcgaccaact
ggattattagatccagaaattgaagttcgtcctattatgggacaaatggatgacttagtt
ggagaaatcaataaacgggttgaacttaatgaaagagtatttgttacaacgttaactaaa
aaaatggctgaagatttaactgattatttcaaagaaatgggaataaaagttaaatactta
cactctgatataaagacattagaaagaaccgaaattgttcgagacttaagaatgggaaaa
ttcgatgtattagtaggtattaatcttttgagagaaggaatagatgtgcctgaagtttca
ttggtagcaattttagatgctgataaagaaggatttttacgaaatgaacgctctttaatt
cagacgattggacgtgctgctcgtaatgcaagtggtcatgtaattatgtatgctgacgat
gtaacaccttctatggaagcagccattaaggaaactaagagacgtcgtagtatccaagaa
caatataataaagatcataatattattcctaaaacaattattaaaccaattagagcagct
atttctataagttcaaaagttaataaatcagatacaaatattagtgatacagtagatttt
gctgatatgagtaagaaggaacaattagaaatgatttctaatctagaagaacaaatgcgt
gaggctgctaagaagttagattttgaagaagctgcaacattaagagatactgtaatggaa
ttgaaagcacagattagttaa
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