Ligilactobacillus salivarius JCM1046: LSJ_3046
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Entry
LSJ_3046 CDS
T03340
Name
(GenBank) Putative ATP-dependent exoDNAse
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lsj
Ligilactobacillus salivarius JCM1046
Pathway
lsj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LSJ_3046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsj03400
]
LSJ_3046
Enzymes [BR:
lsj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LSJ_3046
DNA repair and recombination proteins [BR:
lsj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LSJ_3046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
UvrD_C_2
SH3_13
OB_YrrC
Viral_helicase1
PIF1
AAA_11
AAA
DUF815
AAA_16
AAA_22
RsgA_GTPase
HHH
NPHP3_N
AAA_5
PhoH
AAA_29
HHH_5
AAA_7
nSTAND1
SLFN-g3_helicase
ABC_tran
nSTAND3
Ribosomal_S10
TsaE
Helicase_RecD
HEPN_RnaseLS
Sigma54_activat
bpMoxR
NACHT
Motif
Other DBs
NCBI-ProteinID:
AIR11666
UniProt:
A0A089QL39
LinkDB
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Position
pMP1046B:34384..36705
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AA seq
773 aa
AA seq
DB search
MRDGIKFVGTLNNYIFSSKTSDFKIASINVLDELEGLFRYNNYGNITLKGGMELLPKTEY
EIVASYIVDKKYGEQYNIESYKRTRAIEDMSVEDFNEFMASLGNSADKVAEYFGEKTKDI
MNKALEQNDTSELEKVNGIGKVKASKILDKYGSQRDYSMAIAVFGKWGFTHSKIKTIVNK
YRNQDLAIKKLNENPYNLYLDRIPGIGFKTIDNKALENGIAPNDRRRVEAYIYNFFDDLS
MSGDSYIPIEKLRNHLRTEVYNADLDSATNFILGNEDFKIFKKDGVNCVALRETYELEKK
TAYELLRVQNAWDSKKSIDDIDTYISEVEKEQGWKYGKQQLEAIHTIATNNVFLLQGYSG
TGKSSLLKAVVRAMQANNFTIAQCALSGKAADNLTKVTGLQGMTIHRLLQYNPSSESMFN
YWKKNPLPYDVIILDEVSMVSLDLFYSLVSAIKDGAKLIMVGDSGQLDSIGIGVMSGILD
SQVIPTITLTEIHRQAEESAIISHSITYRKGAMPKEVNKEGLFLCGTKKDLVYKLLENEK
EHDNQGKVVDNLIPNALVFFKKALSKYNVKDIQIITQTTKNCNALNALCQQIANPKNREK
EEYVVSFQNKDDDYVLRVGDKVINTVNNRRTVSAEKGNAITPIYNGNTGIIESITKQVDE
DGDEYIESVINFDGIGRVLLDSGDLRSIRLGYAITVHKSQGSTIPCVIVVLPFQFMLNSR
ELVYTAITRTSELCFVISSYATLAKAIKKSTNKVHKTNLSAFMSLEARKRGDI
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgagagatggaattaaatttgtaggaacgcttaataactatattttttcttccaaaaca
agtgattttaaaattgctagtattaacgttcttgatgagctagaaggcttattcaggtac
aacaattatggcaatatcactcttaaaggtggtatggagctactaccgaaaacagagtat
gaaattgttgcctcatacattgttgataagaaatatggtgagcaatataatatcgagtca
tacaagcgtacacgtgctattgaagatatgagtgtagaagactttaacgagtttatggct
agtctaggcaatagtgctgataaggtcgctgaatacttcggtgaaaagactaaagatatt
atgaataaagctcttgaacaaaacgataccagtgagcttgaaaaggtaaacggtattggc
aaggttaaggcttcaaagatattagataagtatggtagccaacgtgattatagtatggct
attgcagtatttggtaagtggggctttactcattctaagattaaaactatcgttaacaaa
tatcgcaatcaagatttggctattaaaaagctgaatgaaaatccatacaatctatatctt
gaccgtattcctggcatagggtttaagactattgataacaaagcgttagaaaatggtatt
gcacctaatgacagaagacgtgtggaggcttatatctataatttctttgatgatttaagc
atgtctggtgactcatatattcctattgaaaagctacgtaatcatctacgtacagaagtc
tacaatgctgatttagatagtgctactaactttatcttaggcaatgaagactttaagata
ttcaaaaaagatggtgttaattgtgtagctttaagggaaacatatgaacttgagaagaaa
acagcttatgaactattaagggttcaaaatgcttgggatagcaaaaagagtattgatgat
attgatacctacatatcagaagttgaaaaggaacaaggctggaagtatgggaagcaacaa
ttagaagctatccataccatcgccacaaataatgtcttcttattacaaggttattctggt
acgggtaaatcatctttgcttaaagcagtagtaagagctatgcaagctaacaactttaca
atagctcaatgtgctttgtctggtaaggcagcagataacttgactaaagttacagggttg
caaggtatgactattcataggttattacaatacaatcctagttcagaatccatgtttaat
tattggaagaagaacccattgccttacgatgtaattattttagatgaagtttcaatggtt
agtttagacctgttttatagtctggttagtgcaatcaaagatggggctaagttaatcatg
gtaggtgactcgggtcagcttgactcaatcggtatcggtgttatgtctggtattttagac
tcgcaagttattcctacaatcaccttaactgaaattcatagacaagcagaagaaagtgcc
attatatctcattctattacgtatcgtaaaggtgctatgccaaaggaagtaaacaaagaa
ggcttattcctatgcggcactaaaaaggacttagtatataagttactcgagaatgagaag
gaacatgataatcaaggtaaagtggtagataatctaattcctaatgctttagtctttttc
aagaaagccttgagcaagtataacgtgaaggatattcagattatcacacaaactacaaag
aattgtaatgcgttaaatgccctttgccaacagattgctaatcctaagaatagggaaaaa
gaagagtatgtcgtttcattccaaaacaaagatgatgattatgttttacgtgtaggtgat
aaggtcatcaatacagtaaacaatagacgcactgtttctgctgaaaaaggtaatgctatc
acacctatctataatggtaacactggaataatcgagtctattacaaagcaagttgacgaa
gatggcgatgaatatatcgagtctgtaattaactttgatggtatcggcagagtgcttttg
gacagtggtgatttaagaagtattagacttggttatgcaattacagtacataagtcacag
ggttcaactatcccatgtgtaattgtggtattaccattccaattcatgttgaacagtcgt
gagttggtttatacagctattacacgtacaagtgaattatgttttgtaatatctagttat
gctactttggctaaggctattaagaagtctacaaacaaggtgcataagacaaatctatct
gcattcatgtctttggaagctagaaagcgaggtgatatttag
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