Leptothermofonsia sichuanensis: J5X98_06910
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Entry
J5X98_06910 CDS
T07904
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lsk
Leptothermofonsia sichuanensis
Pathway
lsk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
J5X98_06910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsk03400
]
J5X98_06910
Enzymes [BR:
lsk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
J5X98_06910
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
J5X98_06910
DNA repair and recombination proteins [BR:
lsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
J5X98_06910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
Zn_ribbon_6
Zn_ribbon_8
NFACT_N
DUF7573
RPN7_PSMD6_C
Motif
Other DBs
NCBI-ProteinID:
QZZ22122
LinkDB
All DBs
Position
complement(1586658..1587536)
Genome browser
AA seq
292 aa
AA seq
DB search
MPELPEVETVCRGLNLVTLHQTIQGGDVLLNRTIAYPLSVQDFLEGLTGTAIAQWQRRGK
YLLAELIQGTGWQPPTPDFRSPTAGYLGIHLRMTGQLLWVAPSEPLQKHARVRLFFEGQK
ELRFVDQRTFGQIWWVPPGEAPERVITGLQYLGPEPFSDEFSLAYLVKQLKHRRRPVKNA
LLDQAIVAGIGNIYADEALFLSGIHPATLCIDLSRRKIDRLRTNILQVLQTSIDARGTTF
NTFRSVEGVNGNYGGVAWVYARDGEPCRTCGTVIQRLRMAGRSAHFCPHCQR
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgagttgcccgaagttgaaactgtctgtagaggtctaaacctggtcaccctgcat
caaactatccaggggggggatgtgctgcttaatcgcacgatcgcctatcctctttctgtg
caggatttcctggaggggctgaccggaactgcgatcgcccagtggcagcggcgaggcaag
tatttgctggcagagttgatccagggtacaggatggcaacccccaacccccgacttccga
tccccaacagccggatatctcggcatccacctccgcatgacagggcaactcctctgggtt
gcgccctcggaaccgctgcaaaaacacgccagagttcgactgttttttgaagggcagaaa
gagttacgatttgtagaccagcgaacctttggccagatatggtgggtgccaccgggtgag
gctcccgaacgggtgataacgggtttgcaatatctgggaccagaacctttttcagatgaa
ttttccctggcttacctggtgaagcaattgaaacatcgccgtcgtcctgtaaaaaatgcg
ttgctcgatcaggcgatcgtggcgggaatcggaaacatttacgccgatgaggctctgttt
ctcagtggtatccatcccgcgactttatgtattgacctcagccgtagaaagattgaccgt
ttacgcacaaacattctgcaagtgctccagacgagtattgatgccagagggacaaccttc
aacacctttcgcagtgtagaaggggtgaatggcaattatggcggggttgcctgggtctat
gcccgtgatggagaaccgtgccgcacctgtggtaccgtcattcagcggttgaggatggca
gggcgatcggcccatttctgcccccactgtcaacgctag
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