Leptothermofonsia sichuanensis: J5X98_14690
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Entry
J5X98_14690 CDS
T07904
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lsk
Leptothermofonsia sichuanensis
Brite
KEGG Orthology (KO) [BR:
lsk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lsk03016
]
J5X98_14690
Enzymes [BR:
lsk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J5X98_14690
Transfer RNA biogenesis [BR:
lsk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J5X98_14690
Prokaryotic type
tRNA splicing ligases
J5X98_14690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QZZ23577
LinkDB
All DBs
Position
complement(3440935..3442116)
Genome browser
AA seq
393 aa
AA seq
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MPFERLNLNTSNPVLSWANHDLGSEETRMAKNVASLPFVFKHVALMPDVHLGKGALVGSV
IATKDAIIPAAVGVDIGCGMCAIQTPFTAGQLDGKLKKIRQDIEAAIPVGFNENKEVDKD
VLNWQGWRDFKHLHPGVQKLESKAMKQMGSLGGGNHFIEVCLDANDQVWLMLHSGSRNIG
NMLAQNHINTGKELARLATIKLPDPDLAYFVAGTPEFAAYWHDLQWAQDYARMNREVMMA
RFQRIVEQHLAGGKPTRPLLSVNCHHNYAEKEVHYGEDVYVTRKGAVRARETDYGIIPGS
MGAKSFIVKGRGNPESYCSCSHGAGRTMSRNKAKTAYTLDDLIQQTQGVECRKDAGVLDE
IPAAYKPIEQVMANQADLVEVVATLKQVVCVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccttttgaaaggttgaacttgaacacctctaacccggttctttcctgggcaaaccac
gacctgggttcagaagaaaccaggatggcaaagaatgtcgcctccctgccgtttgtgttt
aagcatgtggcattgatgccggatgttcacctgggcaagggggcactggttggctctgtc
atcgccactaaagatgccattatcccagcagccgtcggagtcgatattggctgcggtatg
tgcgccattcaaacgccctttactgccgggcaactggacggcaagctgaaaaagatccgt
caggacattgaagccgccattcccgttggctttaacgaaaacaaggaagtggacaaagat
gtccttaactggcagggctggcgtgactttaagcatctgcatccgggtgtgcagaagcta
gagagcaaagcgatgaagcaaatgggatccctgggcggcggcaaccatttcattgaagtg
tgcctggatgcaaatgaccaggtgtggctgatgctgcactccggttcacgcaacattggc
aatatgctggcacaaaaccacatcaacacgggaaaagaactggcgcggctggcaaccatt
aaattgcccgatccagacctggcatattttgttgcaggtacacccgaatttgcagcttac
tggcatgacctccagtgggcacaggactacgcccgcatgaaccgtgaagtgatgatggcc
cgttttcagcggattgtagaacaacacctggcagggggtaagcctaccaggccgttgctg
tccgtcaactgccaccacaactatgctgaaaaagaagtccactacggtgaagacgtttat
gtgacccgcaagggagccgtccgcgcccgcgagactgactacggaattattcctggttca
atgggggcaaagtccttcattgtgaaaggcaggggcaaccctgagagctactgctcttgc
tcccacggtgccggtcgcacaatgtctcgtaacaaggctaaaaccgcctataccctggat
gacctgatccagcagacccagggggttgagtgccgcaaggatgcgggtgtgctggatgaa
attccggcggcttataagcctattgaacaggtaatggcgaaccaggctgatctggttgaa
gtggtggcaacgttgaagcaggtggtttgtgtgaaaggctga
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