Leptothermofonsia sichuanensis: J5X98_19635
Help
Entry
J5X98_19635 CDS
T07904
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lsk
Leptothermofonsia sichuanensis
Pathway
lsk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J5X98_19635 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsk03400
]
J5X98_19635 (mfd)
Enzymes [BR:
lsk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J5X98_19635 (mfd)
DNA repair and recombination proteins [BR:
lsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J5X98_19635 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
Cas3-like_C_2
UB2H
RecG_dom3_C
VpsR
Motif
Other DBs
NCBI-ProteinID:
QZZ19539
LinkDB
All DBs
Position
4548868..4552407
Genome browser
AA seq
1179 aa
AA seq
DB search
MALSSITRALGRSPLTAELWSNLQRHQYLKLTGLARLPKGLVSSALAQAQSRNLLVITAT
LEEASRWTAQLETMGWQTVHFYPTSEASPYEPFDPESEMIWGQLQVLADLVRRGENGEFR
EPAPNAAASLRTLAIVATERALQPHLPPPETFQPYCLTLKQKAELDLDTLAKELTRLGYE
RVPLVETEGQWSRRGDIVDVFPVASELPVRLELFGDELDQIREFDPSTQRSLDRIEQIVL
TPTSYAPIVQATLTGESTAQLKGYLTPEEQEKFDAGQMPEGCRRFMGLAFHPPASLLDYL
PPNTLIAMDEPEQCEAHGASWYENVADHYAEVGQGLPPIHRRLQEVLPQLETFDRLYLYE
LAEEQAPRSASKDKGPAPVNLSSRPVPAIPHQFARLAETLRQERDRGFSIWLVSAQPSRS
VALLQEHDCPAQFIPNPRDFLAIDKLQVQHVPVAVKYSGLAELEGFILLTFRLVVVTDRE
FFGQHTLATPSYVRKRRRAASKQVDPNKLQPGDYVVHRSHGIGRFLKLESLTLNRETRDY
LVIQYADGLLRVAADQLNALSRFRGAGDTTPELNKMSSKAWERTKSKVRKALKKVAVDLL
QLYASRASQEGFAYPVDMPWQQEMEDSFPYQPTPDQLKATQDVKQDMESDRPMDRLVCGD
VGFGKTEVAIRAIFKAVTGGKQVALLAPTTILTQQHYHTLKERFAPYPIQVGLLNRFRTA
EERRNIQKRLASGELDIVVGTHQLLGKGVQFKDLGLLVVDEEQRFGVNQKEKIKALKTQV
DVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLAPYDPEMIRSAIRQELDRG
GQVFYVVPRVEGIEEIAARIREMIPGVRLAIAHGQMPESELESTMLTFSEGEADILVCTT
IIESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLLYPKQSQLTDAARQR
LRAIQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYVEMLEEAIREIRGQ
EIPQVEDTQIDLNLTAFIPADYIPDLDQKMSAYRVVASATTRQELTQIAADWSDRYGPLP
TAALQLIRIVELKQIAKKLGFSRIKPEGSQHVVLETPMEEPAWNLLKANLPEHLHSRFVY
TPGKVTVRGLGVMNADQQLETLITWLNRMQGALLEPANV
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggcgctttcttcgattacccgtgctctggggcgatcgcccctcaccgcagaactctgg
tcgaatctgcaacgacaccaatacctgaagctgactgggctggcacggctcccaaaagga
ctggtcagttctgccctggcccaggcacaatctcgtaacctgctggtgattaccgccacc
ctcgaagaagccagccgctggactgcccagcttgaaacgatgggttggcaaaccgtccac
ttttatcccacctcagaagcctcgccttacgaaccctttgatccggagtccgagatgatc
tggggacagttgcaagtcctggcagatctggtccgacgaggggagaatggagagttcagg
gaaccagcccccaacgcggctgccagtctccgcacccttgccattgtggcgacagaacgg
gcactgcaaccccaccttcccccgcctgaaacctttcagccctattgcctgacactcaaa
caaaaggcagaactggacctggacaccctggctaaggaactgaccagactgggctatgag
cgggttcctctggtggaaacggaagggcagtggagccgtcgaggggatattgtggatgtc
tttccggtggcatccgagttacccgttcgtctggaactgtttggggacgaactggatcag
atccgtgagtttgacccctccacccagcgatcgctggaccggattgagcaaatcgttctt
acccccaccagctatgctcccattgtgcaggcaaccttaactggcgagagcaccgctcaa
ctgaagggctacctgactccagaagaacaggaaaagtttgacgccggacaaatgccggaa
ggctgccgccgcttcatgggactcgcctttcacccccccgcgtccctgctggactactta
ccgcctaacaccctgattgccatggatgaaccagagcagtgtgaggctcacggagcatcc
tggtatgagaacgtggctgaccattacgccgaagtgggccagggcctgccaccaatccat
cgtcgcctgcaagaggtactgccccagttagaaaccttcgatcgcctctacctttacgaa
ctggcggaggagcaggctccccgctcagccagcaaggataaaggccccgctccggtgaat
ttatccagtcgcccggtgcccgccattcctcaccagttcgcccgtttagctgaaaccctg
cggcaggagcgcgatcgcggcttttccatctggctggtttctgcccaaccttcccgctcc
gttgcccttttacaggaacacgactgccccgcccagtttattcctaatccgcgggacttt
ctggcgatcgacaaacttcaggtgcagcatgtccctgtggccgtgaagtactccgggctg
gcagaactggagggcttcatcctgctcactttccgcctggtggttgtcaccgaccgggaa
ttttttggccagcataccctcgccacccccagctacgtgcgcaaacggcggcgtgctgct
tctaaacaggtagaccccaacaaactgcaaccgggagactacgtggttcaccgcagccac
ggcattgggcggtttctcaaattggaaagcctcactctgaaccgggaaacccgcgactat
ctggtgatccagtacgctgatgggttgctgcgggtggcagcggatcagctcaacgctctg
tcccgtttccggggagccggggacaccacccctgaactcaacaaaatgtccagtaaagcc
tgggagcgtaccaagagtaaagttcgcaaagcgctcaaaaaggtggcggtagatctgctc
caactctatgccagccgcgccagtcaggaggggttcgcctatcccgtggatatgccctgg
cagcaggaaatggaagactcatttccctaccagcccacccccgatcaactcaaggcgacc
caggatgtcaaacaagacatggagagcgatcgcccgatggatcgcctggtctgtggcgat
gtgggatttgggaaaacagaagttgccatccgcgccattttcaaggctgttaccggcggt
aaacaggtcgccctgcttgcccccaccaccatcctgacccagcagcactatcacactctc
aaagaacgctttgccccctacccaattcaggtgggtttgctcaaccgttttcgcaccgcc
gaagagcgccgcaacatccagaagcgcctggcatcgggagaactggatattgtggttggc
actcaccaactgctgggaaaaggggtccagttcaaagacctggggttgcttgtagtagac
gaagagcagcgatttggggtgaaccagaaggaaaagatcaaagccctcaaaacccaggtg
gatgtcctcaccctcagcgctacccccattccccgcaccctgtatatggcactctccggt
gtgcgggagatgagtctgattaccaccccgcctccttcccgtcgtcccatcaaaacccac
ctcgccccctatgacccggaaatgattcgcagcgccatccggcaggaactggatcggggg
ggacaggtcttctacgtggtgcccagggtggaaggaattgaagagattgccgcccgaatt
cgggaaatgataccgggggtaagactggcgatcgcccacgggcaaatgcccgaaagcgaa
ctggaatccaccatgctgaccttcagcgaaggggaagccgatatcctcgtctgcaccact
atcatcgaatcgggactggatatcccccgcgtcaataccattctgattgaagatgctcat
cgcttcgggctggcgcagctttaccagttaaggggacgggtgggacgggcaggcattcag
gcccacgcctggttgctctatccgaaacaaagccagcttaccgatgccgcccgccaacgt
ctgcgagccattcaggaattcacccaactgggttccggttatcaacttgccatgcgcgat
atggaaatccggggggtggggaatctcttgggggcagagcagtcgggacagatggatgcg
atcggctttgacctttatgtggaaatgctggaagaagccatccgggaaattcgcggtcag
gaaattccccaggtcgaggatacccagatcgacctcaatctgactgccttcatccctgct
gactacatcccagacctggatcagaagatgagtgcctatcgtgtggttgcttccgccaca
acccggcaagagttgacccagattgccgcagactggagcgatcgctacggtccgctgccc
actgctgccctccagttgattcgaattgtggaactgaaacaaatcgccaaaaaacttggg
ttttcccgcattaaaccggaaggtagccagcatgttgttctggagacgccgatggaagaa
cccgcctggaatctgctcaaggcaaacctgcccgaacacctccactctcgctttgtgtac
acccctgggaaagtgactgttcgaggcttgggggtgatgaacgctgaccagcaacttgaa
accctgatcacctggctcaaccggatgcagggagcactactggaacctgccaatgtctaa
DBGET
integrated database retrieval system
