KEGG   Leptothermofonsia sichuanensis: J5X98_20945
Entry
J5X98_20945       CDS       T07904                                 
Name
(GenBank) RNA-binding protein hfq
  KO
K03666  host factor-I protein
Organism
lsk  Leptothermofonsia sichuanensis
Pathway
lsk02024  Quorum sensing
lsk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lsk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    J5X98_20945
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    J5X98_20945
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsk03019]
    J5X98_20945
   03036 Chromosome and associated proteins [BR:lsk03036]
    J5X98_20945
Messenger RNA biogenesis [BR:lsk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     J5X98_20945
Chromosome and associated proteins [BR:lsk03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    J5X98_20945
SSDB
Motif
Pfam: Hfq_1 Hfq DUF695
Other DBs
NCBI-ProteinID: QZZ19760
LinkDB
Position
4880220..4880435
AA seq 71 aa
MTVEFETGLPSVRQIQNMIREEKEVELKLTTGDLLAGKISWQDPHCISLTDQYDQPTIVW
RQAIVYLKPRM
NT seq 216 nt   +upstreamnt  +downstreamnt
atgactgtagaatttgaaaccggattacccagtgtccgccagattcaaaacatgattcga
gaagagaaagaggttgaacttaaactgaccactggcgatctgctagctggcaagatcagt
tggcaggacccccattgtatttctcttacggaccagtatgatcagcccacgattgtttgg
cgacaggctattgtttacttgaaacccaggatgtag

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