Leptothermofonsia sichuanensis: J5X98_24460
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Entry
J5X98_24460 CDS
T07904
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
lsk
Leptothermofonsia sichuanensis
Brite
KEGG Orthology (KO) [BR:
lsk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lsk03016
]
J5X98_24460
Enzymes [BR:
lsk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
J5X98_24460
Transfer RNA biogenesis [BR:
lsk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
J5X98_24460
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
NNH6
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QZZ20370
LinkDB
All DBs
Position
complement(5666645..5668663)
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AA seq
672 aa
AA seq
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MEKGTLVEFRLNGDRRLAVIERPEGKKHWIATDERGQSHTLHPRQITYEVGGGYKPSDIP
QFLKETQANLDPSSLEVAWELLVDEGETTNPAEMALLLFSEQEPALCYAAHWLLSDDRLY
FKQKGDRYEPRPKNQVAELKHQLEMAEQRQREWTEFISRIEQALSGQPVEWQVSDRPRLE
ALERFATFGEDATHRAPALETLLHLKRPETPEAAFQLLVDLGLWSLHENLPLRRSQIPVQ
FPAKVLEVAHHRLISPPPDLDTNRLDLTHLKVYTIDDESTCEIDDGLSLEFLPDGTQRLW
IHIADPSRWLEPGDELDLEARRRSTTLYLPTGMIPMFPVELATGPMSLVQGKVCCALSFG
VVLDDTGAIQDYCIHTSLIKATYRLTYEDVDEMLELGVEAESELEAIAQWATRRRQWRQI
QGAISINMPESSIKVSDDDEIIIQVLNDSLARHLVAEMMILAGEVAARYGQAHSLPLPFR
YQSQPELPPEEELLLLPPGPVRDCAIRRCMPRSEMGITPARHASLGLDTYAQVTSPIRRY
TDLLAHFQLKAHLRGDPLPFSTEEMKELTMSVSTAAYEATLVERQTNKYWGLEFLRRNAD
EVWHALMLRWLREHENLGLILLEDLGIELPMRFNRAINPGDRLEIKVLHANPRQDFIHFQ
EMIHQTPQTVNN
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggagaagggaactctcgttgaatttcgtctgaatggcgatcgccgcctggctgtcatt
gaacgtccagaaggtaagaagcactggattgcaacggatgagcgggggcagtcccataca
cttcatcctcggcagataacctacgaagttgggggaggctacaaaccttccgatatccct
caattcctgaaagagactcaggcaaacctcgacccctccagcctggaagttgcctgggag
cttctggtagacgaaggagaaaccaccaacccggcagaaatggcactgttgctcttttca
gagcaggaacccgccctgtgctacgctgcccactggcttctgtccgacgatcgcctctat
ttcaagcaaaagggcgatcggtatgagcctcgccccaaaaaccaggtggcagagctgaag
caccagttagagatggcggaacaacgccagcgggaatggacagagtttatttcacggata
gagcaggcgctctccgggcagccagtggagtggcaggtgagcgatcgcccccggctggaa
gcactggaacgatttgcaacctttggggaagacgccacccatcgggcacctgccctggaa
accctgctacacttgaaacgacctgagacacctgaagctgcttttcaactgctggtggat
ttagggctgtggagccttcacgagaacctacctttgcggcgcagccagatcccagttcag
tttcccgcaaaggtattggaagtggcacatcaccgtttaatctccccacctcctgattta
gataccaatcgtctggatctgacccatttgaaggtctacaccattgacgatgagagtacc
tgtgagattgacgatggtctaagtctggaatttttgccagatggaacccaacgtctgtgg
attcatattgctgatcccagccgctggttagaacccggcgatgaactggatctggaagcc
cggcggcgcagcacgactctctatttgccgacaggcatgattcccatgtttccggtagaa
ctggcaaccggacccatgagtctggtgcagggaaaggtttgctgtgccctgagttttggg
gttgtgctggatgacacgggagccattcaggactactgtatccacaccagcctgattaaa
gcgacctatcgcctcacctatgaggatgtggatgaaatgctggaactgggtgtagaagca
gagtcagaactggaggcgatcgcccagtgggcaacacgccgacggcaatggcggcagatc
cagggtgccattagtatcaacatgcctgaatcgtctatcaaagtatccgacgatgacgaa
atcattattcaggtgctgaatgattccctcgcacggcatctggttgcagagatgatgatt
ctggcgggggaagtggctgcccgttatggccaggctcacagtttgcctctccccttccgc
taccagtcccagcccgaattgcctccagaagaagaattgctgttgctgccaccgggaccc
gtgcgtgactgtgcgattcgacgctgtatgccccgcagcgaaatgggcattacccccgcc
cgccatgccagcctggggttagatacctatgcacaggttacttcccccattcgtcgctac
actgatttactggcacactttcagctcaaagcacacctgcgcggcgacccccttcccttc
tcgacagaagagatgaaagagctaaccatgagtgtcagcaccgccgcctatgaagccacc
ctggtcgagcgccagaccaataaatactggggactggagttcctccggcgcaatgccgat
gaagtctggcacgccctgatgctgcgctggctgagggaacatgaaaatctagggttgatt
ctgctggaagatctgggaattgaactgccgatgcgcttcaaccgggcgattaacccgggc
gatcgcctggaaattaaagttttacacgccaacccgcgccaggacttcattcacttccag
gaaatgatccaccagactcctcagaccgtcaataattaa
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