Leptothermofonsia sichuanensis: J5X98_24800
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Entry
J5X98_24800 CDS
T07904
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lsk
Leptothermofonsia sichuanensis
Pathway
lsk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J5X98_24800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsk03021
]
J5X98_24800
03400 DNA repair and recombination proteins [BR:
lsk03400
]
J5X98_24800
Enzymes [BR:
lsk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J5X98_24800
Transcription machinery [BR:
lsk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J5X98_24800
DNA repair and recombination proteins [BR:
lsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J5X98_24800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
RNA_pol_Rpb1_3
Biotin_lipoyl_2
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QZZ20424
LinkDB
All DBs
Position
complement(5735517..5739506)
Genome browser
AA seq
1329 aa
AA seq
DB search
MAEQNNQPIFRNRVINKGQLTRLISWAFTNYGTARTAQMADLLKDLGFRYATKAGVSISV
DDLQVPASKRQLLDSAEETIRETEDRYTRGEITEVERFQKVIDTWNSTNEDLKNEVVRNF
KTNSPLNSVYMMAFSGARGNISQVRQLVGMRGLMANPQGEIIDLPIKTNFREGLTVTEYI
ISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIREVDCGTQRGIVLRSMKDGDRTLI
PLKTRLLGRVFARDVLHPVTGEVLATRNQDISETLAEQIEKAGVEEVMVRSPLTCEATRS
VCQSCYGWSLAHAKTVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEMARQERASF
EGTIRFPKKLRTRPYRTRHGEDALVVESADAKSQITLEGKNGQQQSFSVAQGATVLVRDG
ETVKPGQILAEVPLTGRSRKTTEKAAKDVASDMAGEVKFADLVPEEKKDRQGNTTRIAQR
GGLLWILSGEVYNLPPGAEPIVNNGDRVETGGVIAETKLITEHGGTVRLPQETEGKGGRE
VEIITASVLLDQARVRVESYQGRDHYLIETNHNQLFSLKATPGTKVTNNQVVAELIDDHY
RTQTGGIIKYSGVEVAKRGKAKQGYEVVKGGTLLWIPEEAHEVNKDISLLMVEDGQYVEA
GTEVVKDIFCQSSGVVEVTQKNDILREIVIKPGDLHMIDNLDDIITRESTLVNPGQQIMP
GLVAEELRYAEYVETPEGPAMLLRPVTEFAVPDEPSVPSQESTSEESGRSIRLRAVQRMP
YKDGERVKSVEGLELLKIQLVLEIDKDAPQLAADIELVPDETEPDTLRLQLVILESLVVR
RDIAADPTQGSTLTRILVKDGDLIAPGAVVARTEIQCKEAGEVRGIRQGAEAIRRILVVR
DADQVTIEIPGKPATVKAGDLLVAGSEIAAGIVLEESGQVVEVGDGYIKLRSARPYRVSP
GAVLHIDDGDLVQRGDNLVLLVFERTKTGDIIQGLPRIEELLEARKPKEACILVERAGTA
QVTYGEDDSVEVKVIETDGVVTEYNLNPGQNVIVSDGQEVSAGERLTDGPANPHELLEIL
FKANRESAGIHDAALLSLREVQMFLVNEVQSVYQSQGIDISDKHIEVVVRQMTSKARIDD
GGDTTMLPGELVELYQVEQVNEAMSITGGAPAEYTPVLLGITKASLNTDSFISAASFQET
TRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFNAYEEVGSPDIDLTYEGINMFDDDT
DLRDVVLDDRTARAYGLDSFEDRPNFTFDNFGMTAESPAFSPILEDDDLISDDISDDGDD
DDDDDDDDL
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atggcagagcagaacaatcaaccaatttttcgcaaccgggttatcaataaggggcagtta
acccggctgatctcttgggcatttacaaattatggcaccgcccggactgctcagatggct
gacctcctgaaggatctgggcttccgttatgccaccaaggcaggggtttcaatcagtgtg
gatgaccttcaggtgcctgccagtaaacggcagttgcttgactctgctgaggagacgatt
cgggaaacggaggatcgctatactcgcggtgaaattacagaagttgagcgattccagaag
gtcatcgatacctggaacagcaccaatgaggacttaaaaaacgaagttgttcgtaacttt
aagaccaacagtccgctcaattccgtctacatgatggcgttctctggagcgcgaggaaat
atctcccaggttcgtcagttggtgggaatgcggggattgatggcaaatcctcagggggaa
attattgacctgccgattaagacgaatttccgggaaggattaaccgtcacggagtatatt
atttcctcttacggtgcccgtaaaggtctggtagatacagcgttgagaacagcggactcc
ggttatttgacccgtcgcctggtagacgtttcccaggatgtgatcattcgggaggtggat
tgcggtacccagcgggggattgtactgcgcagcatgaaggatggcgatcgcacgctaatt
ccgctcaaaacccgcctgctgggccgtgtttttgcccgggatgtgctccatccggtcact
ggagaagtgctggcaacccgcaaccaggatatttcagaaaccctggctgaacagattgaa
aaggcaggcgtggaagaggtgatggtgcgatcgcccctcacctgtgaagccacccgttcc
gtgtgtcagtcctgctatggctggagtctggctcatgccaagacggtcgatattggcgaa
gccgtagggattatcgcggctcaatcgattggagagccgggaacccagttgacgatgcgg
accttccacactggcggcgtgtttaccggggaaatggcccgccaggaacgggccagcttt
gaaggcaccattcggtttccgaaaaagttacggacccgtccgtatcggactcgccacgga
gaagatgcgctggtggtagagtcagccgatgccaagtcccagatcacgctggaagggaaa
aatggtcagcaacaatccttttccgttgcccagggggcgactgtcctggtccgggatggg
gaaacggtgaagccaggacaaattctggcagaagtgcctctgaccgggcgatcgcgcaaa
accactgaaaaagcggctaaggacgtagcgtctgacatggctggcgaggtcaaatttgcc
gatctggtgccggaggaaaagaaagaccggcagggcaatacgacccgtattgctcagcgg
ggcggtctgctctggattctctctggggaggtttataacttaccgccgggtgcagaacct
attgtcaataatggcgatcgcgtcgaaacaggcggagtgatcgctgaaaccaaactcatc
actgaacacggaggtacggttcgcctgccgcaagaaacggaaggcaaaggtggccgggaa
gttgaaatcatcaccgcctctgtactgctggatcaggcccgcgtgcgggtagaaagctat
cagggacgggatcactacctgattgaaacgaatcacaatcagcttttttccctgaaagcg
actcccggaaccaaagtgaccaataaccaggtggtcgctgaactgatcgatgaccactac
cgtactcaaacgggtggcattatcaaatattccggcgtggaagttgccaaacggggcaag
gccaaacagggatacgaagtggtcaaaggaggtaccctgctatggattccggaggaggct
cacgaagtcaataaggacatttccctcctgatggtggaagatggtcagtatgtggaagca
ggcaccgaagtcgtcaaagacatcttctgccagagcagcggtgttgttgaagtaacccag
aaaaatgacattttgcgggaaatcgtgatcaaacccggcgatctgcatatgatcgataac
ctggatgacatcattacccgtgagagcaccctggttaatcctggtcaacagatcatgcca
gggctggttgccgaggaattacgctacgccgagtatgtggaaaccccagaaggaccagcc
atgctgctacgtccggtcacagagtttgccgtacccgatgagccttccgttcccagccag
gaatccaccagtgaagagtcggggcggtccattcgtctgcgggctgtgcagcggatgccc
tataaggatggcgagcgggtcaaatccgtagaagggctggaactgctcaaaattcaactg
gtgctggagattgataaggatgcgcctcaactggcagccgacattgagctggtacccgat
gaaaccgaaccggataccctgcgcctccagctcgtcattctggagtctctggtggtgcga
cgagatattgccgctgacccgacccagggcagcacgctgacccgcattctggttaaagat
ggcgacctgattgcccctggagcggtggttgcccgtaccgagatccaatgtaaggaagcc
ggggaagtccgcgggattcgccagggtgccgaagctatccgtcggattctggtggttcga
gatgccgaccaggtgaccattgaaattccagggaaacctgccaccgtaaaagcaggcgat
ttgctggtggcggggtctgagattgcggctggaattgtcctggaagaatccggtcaggtc
gttgaagtgggagatggctacatcaaactgcggtctgcccgtccctatcgggtatctcct
ggagcggtgcttcacattgatgatggcgacctggtacagcggggtgacaatctggtgttg
ctggtgtttgaacgcaccaagaccggggacattattcagggtcttcccagaattgaggaa
ttgctggaagctcgcaaacccaaggaagcctgcatactggtggaacgggctggtactgct
caggtaacctatggggaagacgattcagtggaagtcaaggtgattgaaaccgatggagtg
gtgacagaatacaaccttaatcctggacaaaatgtgattgtcagcgacggacaagaagtg
agtgccggggaacggctcacggatggtccggctaacccccatgaattgctggagatcttg
ttcaaagcaaatcgggaatcggcagggatccatgatgctgccctgctcagtttgcgagaa
gtccagatgtttctggtaaatgaggttcagtcagtgtatcagtcccaggggattgatatt
tccgataagcatattgaggtcgtggtgcgccagatgacatctaaggcccggatagatgat
ggcggtgatacgaccatgttgcccggtgaactggttgaactgtaccaggtcgagcaggtg
aatgaggcaatgtccattactggtggtgctccagcggaatatacgcccgtactgctgggt
attaccaaggcatcgctgaatacagatagctttatctcggcggccagtttccaggaaact
acgcgggttctgacagaggctgcgatcgaagggaagtctgactggttgcggggtttgaag
gaaaacgtcattatcggacgcctgattccggcaggtacgggctttaatgcctatgaagag
gtgggcagcccggatattgatctgacctatgaaggtatcaatatgttcgatgatgatacg
gatctgagggatgttgtgctggacgatcgcaccgcccgtgcctatggattagacagcttt
gaagatcgccccaacttcacctttgacaactttggcatgacggctgaaagtcctgcattt
tctcccatcctggaagatgatgacttgattagcgatgatataagcgatgacggagatgat
gacgatgatgacgatgacgatgatctgtag
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