Ligilactobacillus salivarius UCC118: LSL_0640
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Entry
LSL_0640 CDS
T00337
Name
(GenBank) Metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lsl
Ligilactobacillus salivarius UCC118
Pathway
lsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSL_0640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsl03019
]
LSL_0640
Messenger RNA biogenesis [BR:
lsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LSL_0640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ABD99450
UniProt:
Q1WU85
LinkDB
All DBs
Position
682789..684486
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AA seq
565 aa
AA seq
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MSDIKIISLGGVRENAKNMYAVEVDDEIFILDCGLKYPENELLGIDFVIPDFSYLRENSR
KIVGVFLTHGHADAIGALPYFVSEFDVPVFGSELTIELAKIACENEEDARKFDDFHVIDE
STEIDFENATISFFQTTHSIPESLGVVIKTENGNVVYTGDFKFDQSAEKGYRTDYARLTE
IGREGVLALLSESANAENPRETVNERAIYDFISENFEYRKGRIIVACVASNILRVQQIFN
AAAANNRKVALTGHDVEKVVKTAMRLNKLVLPEEDLLIPIKKINDYNDDEIVILETGRSG
EPLKSLQKMAMGRHRFVNLHEGDLVFITTTPSHAMETKVARTRDMIYRSGADVKAIFDEL
NSSGHASKNDLQLMMNLVKPRYVIPVQGEYRMLSAHAELARELGIPSENIFLLKKGDVLE
YKKDEMTISSSVEVGNTMIDGTGVGDIGNIVLRDRKILSEDGIFIAVVTIDRKKRKIVDT
PKITSRGFVYIKTSKDLMVESRDIVAKIVQRDLDNKEFDWSQLKQDIRENLNNFLYEQTK
RHPVILPVIMEINQNNHFSKKKKKG
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatataaaaatcatctcgctaggtggggtacgtgaaaatgcaaaaaacatgtat
gctgtcgaagttgatgatgaaatatttattttagactgtggattaaaatatccagaaaat
gaattattaggtatagattttgttattcctgatttttcatatttaagagagaattcacgt
aaaatagtgggtgttttcttaacacacggtcatgcagatgccataggagcgctaccgtat
tttgttagtgaatttgatgtgccagtttttggatcagaattaacaattgaactagctaaa
attgcatgtgaaaatgaagaagatgctagaaaattcgatgattttcatgtaattgatgag
agtacagaaatagattttgaaaatgcaacgatatcattttttcaaactacacattctatt
ccagagtctttgggtgtggttattaaaacagaaaatggaaatgttgtttatactggagac
tttaaatttgatcagtctgcagaaaaaggttatcgaacagattatgcaagattaactgaa
attggtcgtgaaggtgtgctagctttattaagtgagtcagccaatgctgaaaatcctaga
gaaacagttaatgagcgagcaatatatgattttattagtgaaaattttgaatatcgtaaa
ggaagaattattgtagcttgcgtagcttcaaatattttacgagtacaacaaatttttaat
gcagctgcagctaataatagaaaagtggctcttactggacatgatgtagaaaaagttgtt
aaaactgcaatgcgtttaaataaattagtattgccggaagaggatttactcatacctatt
aaaaaaattaacgactacaatgatgatgaaattgtaattcttgaaactggacgttctgga
gaaccattaaaatcattgcaaaaaatggctatgggtagacatagatttgtcaatctacat
gaaggagatttggtatttattacaactactccatctcatgctatggaaactaaggttgca
agaactagagacatgatatatcgctcaggagcagacgttaaagctatttttgatgaatta
aattcttcaggtcatgcaagtaagaatgatttgcagttaatgatgaacttggtaaaacca
cgttacgtcattcctgttcaaggtgaatatagaatgttgtctgcgcatgcagaattagct
agagaactagggattcctagtgaaaatatctttttactcaaaaaaggtgatgtcttagaa
tataagaaagatgagatgacaatttcatcaagtgtagaagtaggtaacactatgattgat
ggaactggcgttggggatattggaaatattgttttgagagatagaaaaatcctatcagaa
gatggaatttttattgctgtggttactattgatcgtaaaaagaggaagattgttgatact
cctaaaataacatctcgtggtttcgtatatattaaaacaagtaaagatttgatggttgaa
agtagggatattgtagctaagattgttcaaagagatttggataataaggaatttgactgg
agccaattaaaacaagatattcgagaaaatttgaataattttttgtatgagcaaacaaag
cgtcatccagttattttaccagtaattatggaaataaatcaaaataatcatttttctaag
aagaaaaagaaaggttaa
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