Ligilactobacillus salivarius UCC118: LSL_0646
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Entry
LSL_0646 CDS
T00337
Name
(GenBank) Metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lsl
Ligilactobacillus salivarius UCC118
Pathway
lsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSL_0646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsl03019
]
LSL_0646
Messenger RNA biogenesis [BR:
lsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LSL_0646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
SIS_2
DUF4453
Motif
Other DBs
NCBI-ProteinID:
ABD99456
UniProt:
Q1WU79
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All DBs
Position
complement(691520..693196)
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AA seq
558 aa
AA seq
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MKKLNVKNNETAVFAIGGLGEIGKNTYGIQFQDEIIVVDAGIKFPEDDLLGIDYVIPDYS
YLIANQQKIKALVITHGHEDHIGGIPYLLQKINVPVYAGPLALALIKSKLEEHGLLRTTE
LHEIDEDSILKFRKTTVSFFRTTHSIPDTLGVAVKTPSGTIVCTGDYKFDLTPVTNQPPN
LQKMAKLGDEGVLCLLSDSTNAEVPNFTKSERWVGRSIRRIFEKVEGRIIFATFASNISR
VQQATSAAIARGRKIAVFGRSMEAAIVNGRELGYLDIPDDALVDAREISSLPANKIMILC
TGSQGEPMAALSRIANGTHRQVSIQPGDTVVFSSSPIPGNTTSVNKVINELEEAGATVIH
GKVNNIHASGHGGQEEQKLMLRLMKPKYFMPVHGEYRMLKIHTELAEKCDVPKENSFILK
NGDVLALTKDSARYAGHFNAGDVYVDGSGVGDIGNVVLRDRRLLSEEGLVVVVATIDMQK
RQIIAGPDLLSRGFIYMRESGDLINQGRRHLYRSIKRELKNDKVSEAQIKNTIISDLQEF
LFEQTERHPMILPMLVTI
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaactaaatgttaaaaataatgagactgctgtttttgcaatcggtggtcttgga
gaaattggaaagaatacttacggtatccaatttcaagatgaaatcatcgtagtggatgct
ggtatcaaatttccagaagatgatttgttaggtattgattatgttatacctgactactca
tatttaattgcaaatcaacaaaaaattaaagctttagttatcacacatggacatgaggat
catattggcggtattccttatttactacaaaaaataaatgtacctgtctatgctggccct
cttgcacttgcattgattaaaagcaaactagaagaacatggactacttcgcacaactgaa
cttcatgaaatagatgaagactctattctaaaatttagaaaaacgacagtatcttttttt
agaacaacacattctatccctgatactttaggtgtggctgtcaaaacaccttctggaaca
attgtatgtacaggagattataagttcgaccttactcctgttacaaatcagccacctaat
ttacaaaaaatggcaaaattaggtgatgaaggtgtgctttgcctactttctgatagtact
aatgctgaagttcctaactttactaagtcagaacgctgggttggccgttctattcgtcgt
atatttgaaaaagtcgaaggccgtataatatttgctacttttgcctctaacatttcgcgt
gtacagcaagctacatctgcagctattgctcgtggtcgtaaaatagctgtttttggacgt
agtatggaagctgcaattgtaaatggtagagaacttggttatttagatattcctgacgat
gctttagttgatgctagagaaataagtagtttacccgctaataaaattatgattctatgt
acaggatctcaaggagaacctatggcagctttgagtcgtatagctaatggtactcaccgt
caagtatctattcaacccggtgatactgtagtattctctagttctcctattccaggaaat
actaccagtgtaaataaagttattaatgagttagaagaagctggagctactgttattcat
ggtaaagttaataatattcacgcctctggacatggtggtcaagaagaacaaaaacttatg
cttcgcttgatgaaacctaagtacttcatgcctgtccatggtgaatacagaatgttaaaa
attcatactgagttagctgagaagtgtgatgttcctaaagaaaattcatttattctaaaa
aatggagatgttttagcacttacaaaggattcagcaagatatgcaggccactttaatgct
ggtgatgtctatgttgacggttctggcgttggagatattggaaatgttgtacttcgagat
cgtcgtttactttcagaagaaggtctagtagttgttgtagcaaccatagatatgcaaaag
cgccaaattattgccggcccagatttattatcacgaggttttatctacatgcgtgaatct
ggcgatttaattaatcaaggtcgtcgtcatctttatcgttctattaagagagaacttaaa
aatgataaagtttctgaagctcaaattaaaaatactattatctctgatctgcaagaattt
ttatttgaacaaacagaaagacatcctatgattttaccaatgcttgttacaatataa
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