KEGG   Ligilactobacillus salivarius UCC118: LSL_0728
Entry
LSL_0728          CDS       T00337                                 
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
lsl  Ligilactobacillus salivarius UCC118
Pathway
lsl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lsl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    LSL_0728 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lsl03400]
    LSL_0728 (recD)
Enzymes [BR:lsl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     LSL_0728 (recD)
DNA repair and recombination proteins [BR:lsl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     LSL_0728 (recD)
SSDB
Motif
Pfam: AAA_30 AAA_19 HHH_RecD2 OB_YrrC SH3_13 UvrD_C_2 AAA_11 Viral_helicase1 UvrD_C UvrD-helicase HHH_5 TsaE HTH_IclR T2SSE AF1548-like_C AAA_29 JHBP ATP-grasp_2 nSTAND3 DEAD AAA_28 AAA_16 AAA_22 AAA NPHP3_N SLFN-g3_helicase IMS_HHH Ribosomal_S13 NTPase_1
Other DBs
NCBI-ProteinID: ABD99538
UniProt: Q1WTZ7
LinkDB
Position
774802..777276
AA seq 824 aa
MSEELDLFAQEDNGKYLIGTVNGVYFEASDSFYKVLQVLIKETNFDWDDQRITVTGSFAN
IQTDSLYRFEGNVVEHQRYGKQFQAESYQLELPSTKDGVIAYLSSDEFVGIGKKTAEKIV
KKLGVDAIDVLNNDMDKLEELGLSEKQKDSIKKVLKENYGIDKIIIELNSLGFTSTMAGR
IYNNYTNSTLEIIHEDPYRLSVDIDGISFTKADQIAQQFGFASDSPGRIRGAIFQSLYDL
TYATGNTYVELNPLVTETLKLLESNRNEAIDPQLVADQLIKLTEEDKIKSDDNKVYSRTF
FNAEWNIAENLYRLLKSGNSDLPNNDALLDKLLIKAEDQLGIDYDSEQKRAIKDAIKSPV
FLLTGGPGTGKTTIINGIVAVYALLNDIDLDIGKYDKDNPFPILLAAPTGRAAKRMAEST
GLPASTIHRMLGINAHDDKLPEDIQELEGALLIVDETSMVDTLIMDLLLNSIPSHMQVIF
VGDRNQLPSVQPGQVFSDLLVSDALPKKELTKIYRQGEGSSIINLAHSIKNGELPADFTK
AQSDRAFIPCEAGQLTSAVEQVVKAALNKGNSKDDIQVLAPMYRGNVGINRLNTILQELL
NPANPRQKEVIFNEQVFRIGDRVLHLVNDPENNVFNGDIGKIVGINIPKTKKDKKGEQII
ADFDGNEVTFDKKDWINLTLAYCMSIHKSQGSEFPIVVLAMLPQYQRMFARNLLYTGITR
AKQKLVLLGNVSSFRQSAEIISLNRKTGLLKRIRMEFGVEGKPVEKTDNEEVAVNNNKEQ
DSIVEEQDEPFIYNDGILTMDIIVNNKVDAMIGMNDITPYDFMR
NT seq 2475 nt   +upstreamnt  +downstreamnt
atgagtgaggaattagatctttttgcccaagaagataatggtaagtatcttataggaaca
gtaaatggtgtctattttgaggcttccgatagtttttataaagttctacaagtcttgatt
aaggaaactaatttcgactgggatgatcagagaataactgtgacgggaagctttgctaat
atccagacagattctttatatcgatttgagggaaatgttgtagaacatcaacgttatggg
aaacagttccaagctgaaagttatcaactagaattaccttctacaaaagatggtgtaatt
gcatatctttcgagtgatgaatttgttggtataggtaagaagacagctgaaaaaatagta
aaaaaattaggtgtagatgctattgacgttttaaacaatgatatggataaattggaagaa
cttggattatctgaaaagcaaaaggacagtataaaaaaagttttaaaggaaaattatgga
attgataaaatcataattgaacttaatagtttaggttttactagtacaatggctggaagg
atctataataactatacaaacagtaccttagaaataatccatgaagatccatataggtta
tccgtagatattgatggaattagctttactaaagcagatcaaatagcacaacaatttggc
tttgctagtgattcccctggtagaattcgaggagctatttttcaatcattatatgatttg
acttatgctacaggaaatacttatgttgagttaaaccccttagtaactgaaacattaaag
cttcttgaaagtaatcgcaatgaagcaattgacccacaattagttgcagatcagttaatt
aagcttactgaagaagataaaattaagtctgatgataataaagtgtacagtagaaccttt
ttcaatgctgagtggaatatagcagagaatttatatcgactattgaaatcgggcaacagt
gatttgccaaataatgatgcgttattagataaactcttaataaaggctgaggatcaattg
ggaatagattatgatagtgaacaaaaaagggcgataaaagatgcaattaaatcgccagtt
tttctgttaacaggtggtccaggtactggtaagacaacaattattaatgggattgttgca
gtatatgccttattaaacgacatagatttagatattggtaagtatgataaagataatcca
tttccaatattgttagctgcaccaacaggacgagctgctaaaagaatggcagaatcgacg
ggattaccagcttctacaattcatagaatgttaggaataaatgcacacgatgataaatta
cctgaagatattcaagaacttgaaggtgcattgttaattgtcgatgaaacatctatggta
gatacacttatcatggatttattgttaaatagtattcctagtcatatgcaagttattttt
gtgggagatagaaatcagcttccatcggtacaaccagggcaagtattttctgatttatta
gttagtgatgccttacctaaaaaagaattaacgaaaatctatagacaaggtgaaggttcc
tcaataattaatttggcacattcaataaagaatggagagctaccagcagactttactaag
gcacaatctgacagagcatttattccatgtgaagctgggcaattaacttctgctgttgag
caagtggtaaaagctgctttgaataagggaaatagtaaagatgatattcaagtattagct
ccaatgtatcgtggtaatgtaggaattaataggttaaatactattttacaagaattattg
aatccagctaaccctcgacaaaaagaagttatttttaatgagcaagtatttagaattgga
gatagagttcttcatttagtgaatgatcctgaaaacaacgtcttcaatggtgatattgga
aagattgtgggaataaatatacctaaaactaaaaaagataaaaagggtgaacagataata
gcagatttcgatggaaatgaggtaacttttgataaaaaggattggattaatttgacgttg
gcttattgtatgtccatccataaatctcaaggtagtgagtttccaattgtagtgttggca
atgttaccacaatatcaaagaatgtttgctagaaacttgttatatacaggaataactaga
gctaagcaaaaattagttcttttagggaatgtttcttcatttagacaaagtgcagagatt
atctctctcaatagaaagactggattattgaaacgtataagaatggaattcggagtagaa
ggaaaaccagtagaaaaaactgataatgaagaagttgctgtgaataataacaaagaacaa
gattccattgttgaagaacaggatgaaccgttcatttataatgatggtatattgaccatg
gatattattgttaataacaaagttgatgcaatgataggtatgaatgatataacaccttat
gattttatgagataa

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