Ligilactobacillus salivarius UCC118: LSL_1112
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Entry
LSL_1112 CDS
T00337
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lsl
Ligilactobacillus salivarius UCC118
Brite
KEGG Orthology (KO) [BR:
lsl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsl03019
]
LSL_1112 (srmB)
03009 Ribosome biogenesis [BR:
lsl03009
]
LSL_1112 (srmB)
Enzymes [BR:
lsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LSL_1112 (srmB)
Messenger RNA biogenesis [BR:
lsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LSL_1112 (srmB)
Ribosome biogenesis [BR:
lsl03009
]
Prokaryotic type
rRNA helicases
LSL_1112 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
SWI2_SNF2
AAA_19
Wzy_C_2
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
ABD99920
UniProt:
Q1WT31
LinkDB
All DBs
Position
complement(1139922..1141244)
Genome browser
AA seq
440 aa
AA seq
DB search
MANFREFNFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPI
FQNLNAQKDEVQAVITTPSRELAYQIYEAAKQLAKFSPENIWIQNYVGGTDKQRQIEKLK
SHQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDLQ
MLVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLISTKGRDRNKLIYDLLTM
GEPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLDYQFVVAT
DLAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAITLYEPSEEKLIDELES
MGVHFVPKAVKNGEIVDSYDRNRREKRQTRKESMDPKLRGFVKKEKKKRKPGYKKKIKQA
IKRDEQQKRRIARRQARKMK
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattttagagaatttaattttaaagagtatatttatcaagcattagacgaaatt
aattttaaagaacctactgaagttcaagctcgtttaattccgactattttaaagggtaag
agcgtggtaggacaatcgcaaactggtagtgggaaaactcatacgttcttattacctatc
tttcaaaatcttaatgcacaaaaagatgaagttcaggcagtgattacaacaccaagtagg
gaattagcataccaaatttatgaagcagcaaagcagctagcaaagttttctcctgaaaat
atttggattcaaaactatgttggtggaacagataagcaaagacaaattgagaagctgaaa
tcccatcaaccacaattagtaattgggacaccaggacgtatattggacttggtaagagaa
aatgcacttgatatccataatgctcactatttagtagtcgatgaagcagatatgacattg
gatttaggatttctaaaagaaacagatgcaatagcatcaactttacctaaagacttacaa
atgctggtcttttcagctacgattccagaaaaattacgtccatttctaagaaaatatatg
tacaatccagttattgaagttgttgctaacaagcatgtaattagtccaacaattgataat
tggttaatttcaactaaaggtagagacagaaataagcttatttatgacttactaacaatg
ggtgaaccttatttagcattagtgtttgcaaatactaaagaacgagctgatgagttaaca
aattatcttcgttctcaagggttgaaagtagctaaagttcatggtggtattcaacctcgt
caacgtaagcgaattatgcgtgaaattcaaaatcttgattatcaatttgtggtagccaca
gatttagcggctcgtggaattgatattgaaggtgtttcacatgttatcaatgacgacatt
cctgaagatttagaattctttgtgcatcgtgtaggtagaactggacgtaatggaatgaaa
ggtacagcgatcacactttatgaaccaagtgaagaaaaattaattgatgagcttgaaagt
atgggagttcattttgtaccgaaagcagttaaaaatggtgaaatagttgattcatatgat
cgcaatcgtcgtgaaaagcgccaaacacgtaaagaatcaatggatcctaaattacgtgga
tttgtgaagaaagaaaagaaaaaacgtaaacctggttataaaaagaaaattaagcaagca
ataaaacgtgatgaacaacaaaagcgtcgaattgcacgtcgtcaagcaagaaaaatgaag
taa
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