Ligilactobacillus salivarius UCC118: LSL_1409
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Entry
LSL_1409 CDS
T00337
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase alpha chain
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lsl
Ligilactobacillus salivarius UCC118
Pathway
lsl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LSL_1409 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsl03021
]
LSL_1409 (rpoA)
03400 DNA repair and recombination proteins [BR:
lsl03400
]
LSL_1409 (rpoA)
Enzymes [BR:
lsl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LSL_1409 (rpoA)
Transcription machinery [BR:
lsl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LSL_1409 (rpoA)
DNA repair and recombination proteins [BR:
lsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LSL_1409 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
SAM_EPH
HHH_5
DUF961
Motif
Other DBs
NCBI-ProteinID:
ABE00213
UniProt:
Q1WSB6
LinkDB
All DBs
Position
complement(1482888..1483832)
Genome browser
AA seq
314 aa
AA seq
DB search
MIEFEKPKIHKIEEDNNYGKFVIEPLERGYGTTLGNSLRRILLSSLPGAAITDVQIDGVL
HEFSTIPGVLEDVTLIILNLKKVALSMESEDSQALEINVTGPMEVTAGDIQSNSDVEVLN
PEQYICTVADGAELHVRMNANKGRGYVSANDNKALADDMPIGVLPIDSIYTPIERVNYQV
EKTRVGQKNDYDKLTLDVWTNGSITPSEAISLSAKILTEHLALFVDLTDEAKNAEIMVEK
EETHKEKMLEMTIEELDLSVRSYNCLKRAGINTVQELTNKSEADMMKVRNLGRKSLDEVK
AKLADLGLSLRHDD
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaatttgaaaaaccaaaaattcataaaattgaagaagataataactacggcaag
tttgttatagaaccgcttgaacgtggttatggtacaactttaggtaactctttacgtcgt
atcttactttcttcattaccaggtgctgctattacagacgttcaaattgatggtgttctt
catgaattttctactattccaggcgttcttgaagacgttactttaatcattttgaatttg
aagaaagttgctttaagtatggaatctgaagacagtcaagcattagaaattaatgttact
ggtccgatggaagtgactgctggagatatccagagtaatagtgatgtagaagttcttaat
ccagaacaatatatttgtacagttgctgatggggctgaacttcatgttcggatgaatgct
aataagggtcgtggttatgtttcagctaatgataataaggctcttgcagatgatatgcca
attggtgtattacctatcgactctatttataccccgatcgaacgcgttaactaccaagta
gagaaaacacgtgttggtcaaaaaaatgattatgacaaattaactcttgatgtgtggaca
aatggttctatcactcctagtgaagctattagtctttctgctaagattttaacagaacac
ttggcattgtttgttgatttaacagatgaagctaagaatgctgaaatcatggtagaaaaa
gaagaaacgcataaagaaaaaatgttagaaatgacgattgaagagcttgatttgtcagtt
cgttcatataactgtctaaaacgtgcaggtatcaatacagttcaagaattaactaataag
tctgaagctgacatgatgaaagtacgtaacttaggacgtaaatccttagacgaagttaag
gctaaattggcagatcttggcttgtctttacgtcatgatgactag
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