Lepeophtheirus salmonis (salmon louse): 121113522
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Entry
121113522 CDS
T08214
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1
KO
K05038
solute carrier family 6 (neurotransmitter transporter, glycine) member 5/9
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
121113522
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lsm02000
]
121113522
Transporters [BR:
lsm02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
121113522
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GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
121113522
NCBI-ProteinID:
XP_040563251
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Position
2:27214111..27217927
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AA seq
633 aa
AA seq
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MSSSSKSNNNNICTTNNKKDVVEREKWDSQWDFLLSCLGFAVGLGNIWRFPYLCYEHGGG
SFLVAYVCMLLITALPLFVLELVLGQYVNIGPIKIFNLLCPALGGMGWCMAIISLFICIY
YNVIIAWTFNYMYSSLVLGDLPWKSCGDWSSPSCFTREQDAICSRGNYSIYWNKTCTSLE
GMSCDLFNHTSWNTTHCLNSTSGFITKIDSLLRKSASEEYYSKVVLGLEEDSSWENLGSI
QPHSLLFLTISWIVVGSCLMKGIKTSGKIVYFTALFPFLLLAILFVRGITLDGAIDGILF
YITPKWSKLMEPGIWIDAVTQIYFSLGVTLGGLLTLASYNRFDNNCFRDAIVISFSNCGT
SIFAGFVIFSILGHMAYNLGVPIDQVIRSGPGLTFVVYPEIVTQLPFPQFWSLLFFMMLA
LLGLDSQFVFTETVITAILDTWPHLRRRIEWVTVGTCLFCFLCAWPMCLNGGVYIFQLFN
VYSATWSLMVISFFELFISMAIHGFGSMNINIQEMGVKIPCIVRGYLGLTWQFLTPLTLI
LIMVVNFVNITPCAYGDYVFPNYIQYIGWTMVVFSLLPIPLYFFILLLSPNESDDNTLRG
WIDKLFSSRNWIPQYRRPEITLNDDTNIIPDTV
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgagtagctcctcaaagagtaataacaataatatttgtactactaataataaaaaggat
gttgtcgagagagagaaatgggattctcaatgggatttccttctctcttgcttaggattt
gctgttgggctcggaaatatttggagatttccatatctctgctatgaacatggtggaggt
agttttttggttgcctatgtttgtatgcttttgatcacagcattacccttgttcgttctg
gaacttgtactaggccaatatgtcaatattggacccatcaaaattttcaatctattatgc
ccagccctaggtgggatgggatggtgcatggccataatttctttgtttatttgcatctat
tacaatgttatcattgcttggacatttaactacatgtacagcagtcttgtacttggggat
cttccatggaaaagttgtggggactggagctctccatcctgcttcactcgagaacaagat
gctatatgctcgaggggcaattactcaatttactggaataaaacttgtacctccttagaa
ggcatgagttgtgacttattcaaccatacatcatggaatactacccattgtttaaactcc
acttccggcttcataactaaaatagattcactcctaaggaagtcagcaagtgaggaatat
tattcaaaagtcgttttaggcttggaagaagactcatcttgggaaaatttggggtcgata
cagccccactccctactttttttgaccatttcctggattgtcgtgggctcttgtctcatg
aaagggatcaaaacgtctgggaagattgtttatttcacggctttatttccatttttgctc
ttagctattttatttgtccgaggtataactctggatggggccattgatggaatattattt
tatatcactcccaaatggtctaaattgatggagcccggaatttggatcgacgcagtgaca
cagatctacttctccttaggagttactcttggaggattattgacgttagcatcctataat
cgatttgacaataattgttttagagatgctattgttatttcattcagcaactgtggaaca
tcaatatttgccggatttgtaatattttcaattttgggtcacatggcttataatttagga
gttccgattgatcaagtcattcgatcaggacctggactcacttttgttgtgtatccagaa
atagtgacacaattgcccttccctcaattttggtcattactttttttcatgatgcttgct
ctcttgggattagactcacagtttgtattcacagaaacagttataacggctatattggat
acttggccacatctcagaagacgtattgagtgggttacagttggaacttgtttattttgt
ttcctatgcgcatggcccatgtgcttaaatggaggagtgtacatttttcagttgtttaat
gtgtactccgctacttggtccctcatggtcatctctttctttgagctctttatatccatg
gctatacacgggttcgggagtatgaatataaatatacaagaaatgggagtcaagatccct
tgtattgttagaggctatttaggactcacgtggcagtttctcacaccattaacactaata
ttaatcatggtcgtgaacttcgttaatattacgccatgcgcctatggagactacgttttt
ccaaattatattcagtatataggttggactatggttgtattctcgctccttccaatccct
ctctacttcttcatacttttactctctccaaatgaatcggatgataatactctacgagga
tggatcgataagctttttagctctagaaattggattccacagtatagaagacctgaaatc
actctaaatgacgacacaaacattattccggatactgtttga
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