Lepeophtheirus salmonis (salmon louse): 121113703
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Entry
121113703 CDS
T08214
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03013
Nucleocytoplasmic transport
lsm03015
mRNA surveillance pathway
lsm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121113703
09122 Translation
03013 Nucleocytoplasmic transport
121113703
03015 mRNA surveillance pathway
121113703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121113703
03041 Spliceosome [BR:
lsm03041
]
121113703
03009 Ribosome biogenesis [BR:
lsm03009
]
121113703
03012 Translation factors [BR:
lsm03012
]
121113703
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121113703
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121113703
mRNA cycle factors
Stress granule specific factors
121113703
Spliceosome [BR:
lsm03041
]
Complex C
Other components
EJC/TREX
121113703
Ribosome biogenesis [BR:
lsm03009
]
Eukaryotic type
90S particles
Helicases
121113703
Translation factors [BR:
lsm03012
]
Eukaryotic type
Initiation factors
eIF-4
121113703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
TniB
Utp25_C
AAA_30
UvrD-helicase
Helicase_RecD
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
121113703
NCBI-ProteinID:
XP_040563486
UniProt:
A0A0K2T8I3
LinkDB
All DBs
Position
2:29358392..29360088
Genome browser
AA seq
401 aa
AA seq
DB search
MTEKVIRKVEEDLANVEFETSEDVEVIPTFDSMGLREDLLRGIYAYGFEKPSAIQQRSIK
PILKGRDVIAQAQSGTGKTATFSISILQSIDTTMRETQCLVLSPTRELAVQIQKVLLALG
DYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVYDMIRRRTLRTRGIKMLVLDEAD
EMLNKGFKEQIYDVYRYLPPFTQIALISATLPHEILEMTSKFMADPIRILVKRDELTLEG
IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD
MPQKERDAIMKEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR
FGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgacggagaaagtgattcgaaaagtggaagaagacttggccaacgtcgagttcgagacg
agtgaggatgtggaagtgatccccactttcgattccatgggtctgcgtgaggatctcctg
cgaggaatttatgcctatggtttcgagaagccttccgccattcaacagcggtccatcaag
cccattctcaagggacgcgatgtgattgcacaggcgcagagtggaaccggtaaaacagcc
accttctccatcagtattttgcaaagcattgatacgaccatgagagaaacgcaatgcctg
gttctttccccaacaagagaattggccgtgcagatccaaaaagtgctcctagccctggga
gactacatgaatgttcaatgtcacgcctgcatcggaggaacgaatctgggtgaggatatt
cgaaagctggattatggacaacatgttgtatccggaacccctggacgtgtatatgacatg
attcgccggcgaactcttcgtactcgtggtattaaaatgcttgttctcgatgaagccgac
gaaatgctgaataagggattcaaagagcagatctatgatgtatatcgctatttaccaccc
tttacacaaattgcacttatctccgctacactccctcatgaaatccttgagatgacttca
aaatttatggcagatcctattcgtattttggtaaagcgtgatgaattgacgttggaaggg
attaaacaattttttgttgctgtggagagagaagagtggaaatttgacacgctttgtgat
ctatacgacactttgactatcactcaagctgtcatattttgcaacaccaagaggaaagta
gactggctcacggaaaaaatgcgagaagctaattttactgtgtcgtccatgcatggagac
atgcctcaaaaagaaagagacgccatcatgaaagagtttaggtctggtcaatctcgagtt
cttatcaccactgatgtatgggcaagaggtattgatgtacaacaagtttcgttggtcatt
aattacgatttacccaacaatcgtgagttgtatattcatcgtatcggtagatcaggtcgt
tttggaagaaagggtgttgcaattaactttgttaaaaatgatgatattcgaattttgaga
gatattgaacagtactattctacgcaaattgatgagatgccaatgaatgttgcggatctc
atctaa
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