Lepeophtheirus salmonis (salmon louse): 121114094
Help
Entry
121114094 CDS
T08214
Symbol
Ca-alpha1T
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H isoform X3
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lsm04040
]
121114094 (Ca-alpha1T)
Ion channels [BR:
lsm04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121114094 (Ca-alpha1T)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
HVO_2753_ZBP
Motif
Other DBs
NCBI-GeneID:
121114094
NCBI-ProteinID:
XP_040563880
LinkDB
All DBs
Position
1:complement(3486753..3977074)
Genome browser
AA seq
1503 aa
AA seq
DB search
MIHNSFTEKKQVTSFYYLDPYSDKNYICSTESDSGMHKCRYLPHFIENGMECKASIDTGL
YNATDCIDWNQYYTDCKPGDINPFHGAISFDNIGLAWVAIFLVISLEGWTDVMYFVQDAH
SFWNWVYFVLLIVIGSFFMINLCLVVIATQFSETKRRETAKMKAERAKFQSSSTLSSFTN
SETTNCYREIIKLIAHLLRKLRYRTRKFLKKVRTQRLEKKEKKYLQKQANGDLQDYSVMK
NVLTHSVVHTNNDGKMDLRLEYDDVGVYLVKSNQNRINLDFDEKGTQTDEILALRSGRAF
FEDQSASNGTSPCNHPTLSCQELLALSTALSATLTAQLVFSHKDMKYCSTYNLAEAIDEN
NKKRAIYSLNGSMTGEHELRVTPKKYNSIMEAFLFCSKGIRRFQAALERIVDHNIFQRGI
LFCILINTFSMGIEFHKQPELLTKIVEVSNLVFSAIFAVEMILKVSAYGIFRYISDGFNV
FDGLIVILSSIEIYNGLIHGIEMDGNSGLSVLRTFRLLRILKLVRFLPNLRRQLVVMLKT
MDNVAVFFALLMLFIFIFSILGMNLFGCKFCDKVGNQRKCDRKNFDSLLWATVTVFQILT
QEDWNIVLFSGMQRTSHWAALYFVTLMTFGNYVLFNLLVAILVEGFSNQDEKRSSDRNSE
YSKDPVGKLDDFSSQINSPIRYKNDMFHGDSLDYPDEELEIRNGMYISSGRRESSKVNKS
ILDALRIKVLTEIGEPRQLVMPCPNCGDNRVIMARQVRRQDIENNPIFADLFNNNNNEPN
MNNIHNNQPPPDQQQPNSPPPFVPSPPLPPPANELPPSSVITENDLKPSTKNGANGRSNS
IHMMLEESSNNSTSEIPRNPIYRIRYWLLMGLNKWRRFLYRRDAYTLYVFHPNHKIRLKC
TEITSRGWFDFIVLLFIASNCITLAMERPNIPPWSPERKLLNVLNSIFTFIFTIEMAMKA
ISTGLIYGAEAYFKNGWNIMDGSLVIVSFVDTVSGLLLGKSSKIFDILRVFRLVRALRPL
RVINRAPGLKLVVQTLLSSLKPIGNIVLICCTFFIIFGILGVQLFKGIFYYCEGPHANIV
KNKTQCLELSDKGNRWINHKYNFDNLGHALMSLFVLSSKDGWVNIMYQGLDAVGLDQQPK
ENFNEWRLIYFISFLLLVGFFVLNMFVGVVVENFHRCRAEQEKEERARRAAKRAKKIEER
RRRMMKAPYYIHYSHYRLSVHKVVTSKYFDLAISAVIGLNVITMAMEFYMMPVVLAYALK
VCNYFFTAVFILEAGMKISALGIGRYLSDKWNQLDVVIVLLSVVGIVLEEIKSDMMPINP
TIMRVMRVLRIARVLKLLKMAKGIRALLDTVMQALPQVGNLGLLFFLLFFIFAALGVEMF
GRLECDDDHPCQGLGEHAHFRSFGMAFLTLFRIATGDNWNGIMKDTLREECENGDDCLRN
CCVSPYFAPLFFVVFVLMAQFVLVNVVVAVLMKHLEESHKQMEDDVEVELELEKQLGLAH
ELF
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atgatacataactccttcacagaaaagaaacaagtaacatcattttattacctggatccc
tattcggacaaaaactacatctgttcaacggagtcagattcaggaatgcacaaatgtcga
tacctcccgcatttcatcgaaaatgggatggaatgcaaagcgagtattgatactggactt
tacaatgccacggattgtatcgattggaatcaatactatacggattgtaagccaggggac
attaatccttttcacggggccatttcttttgataacattggcttggcttgggttgccatt
ttcttggttatcagtttggagggttggaccgacgtaatgtattttgtacaagacgcgcat
tctttttggaattgggtctactttgtgttgctcatagttattggatcattttttatgatc
aatttatgcctcgttgtcattgccactcagttctcagagacaaaacgacgggaaacagcc
aaaatgaaggcggaaagagcaaaatttcaatcctcttccacactgtccagttttacaaac
tcagaaacaactaactgctatcgtgaaattattaaattaatagcacatcttctacggaaa
ctcaggtatcgaacacgaaaatttctcaaaaaagtgcgaactcagagattggagaaaaaa
gagaaaaagtatttacaaaagcaggcgaatggagatttgcaagactatagcgtaatgaag
aacgttttaacgcactctgtggttcatacaaacaatgatggtaaaatggatttgagactc
gaatatgatgatgtgggtgtttatttagtcaaaagcaatcaaaaccgaatcaatttggac
tttgatgaaaaaggtactcagacggatgagattttagcactccgctccggtagagctttt
tttgaggatcaatctgcatctaatggaacatctccatgtaatcatccaactctttcttgt
caagagcttcttgctctttcaactgccctatcagctactctaacagctcagcttgtcttt
agccacaaggatatgaaatactgttctacctataatttggctgaagcaattgatgaaaac
aataaaaaacgtgccatttatagtttgaatggctccatgacaggagagcatgagctaaga
gtcactccaaagaagtacaatagcattatggaagcctttttgttctgttccaaggggatt
cggcgttttcaagctgctctagaaagaattgttgaccacaatatattccaaagagggatt
ctcttttgtattctaataaatactttcagtatgggaattgagtttcataaacaaccggag
ctcctaaccaaaatagttgaagttagtaatttggtatttagcgcaatttttgcggtagaa
atgattcttaaagtatctgcttacggaatatttcgatacatcagtgatggtttcaacgta
tttgatggtcttattgtcatattaagttcaatagaaatatataatggattaatacatggg
atagaaatggatggtaattccgggctctccgtactaagaacctttcgcctcctaaggata
ttaaaattagttcgtttccttccgaatcttcgacgtcaattagttgttatgctaaaaacc
atggacaacgtggctgtgttttttgccctactcatgctatttatattcatattcagcata
ctgggaatgaatctctttggttgtaagttctgcgacaaagtagggaatcaacgaaaatgt
gatcgaaaaaactttgattccttactatgggccaccgtaactgtctttcaaatcctaact
caagaggactggaacattgttcttttctcaggcatgcagagaacaagtcattgggctgct
ttatattttgttacactcatgacatttgggaactacgttttgtttaatctcttggttgcg
atattggttgagggatttagtaatcaggatgaaaaacggagctcagatcgaaattccgag
tattcaaaggatcctgtgggaaaattagatgattttagtagccaaattaattcaccaata
cgctataaaaatgatatgttccatggagattcattggattaccctgatgaggaattggag
atacgaaatgggatgtatatttcgtcagggagacgggaatcgagtaaagtgaataaatca
attctggatgcactacgaatcaaagtgttgacagaaataggcgagccacgccaattagta
atgccctgccctaactgcggtgacaatcgtgtcattatggctcgacaagttagacgccaa
gacattgagaacaatccgatattcgccgacttgtttaataataataataacgaaccgaac
atgaacaacattcataacaatcaaccacctccggatcagcaacaacccaattcccctcca
cctttcgttccatcccctcctcttcctcctccagccaatgaattaccgccaagtagtgtc
attactgaaaatgacctaaagccttcaactaaaaatggggccaatggcagatccaactcc
atccatatgatgctggaagaatcatctaataactccacatcagaaattccccgaaatccc
atttaccgaattcgttattggctcctcatgggtttgaacaaatggaggcgctttctatat
cgaagggacgcctacacactctacgtatttcatcctaatcacaaaattcgattaaagtgt
actgagattacgtcaaggggttggtttgacttcatcgttctcctcttcattgcgagtaat
tgtattactttagccatggaacgacccaatatacctccttggtctcctgagaggaaactc
cttaatgttcttaactcgatttttacctttattttcacaatcgaaatggccatgaaggcc
atatctacgggtttaatatatggtgctgaggcttattttaaaaacggatggaacatcatg
gacggctctttagtgatagtttcatttgtagatacagtatctggtctcttactagggaaa
agctctaaaatatttgatattctacgcgtttttcgactcgtaagagcccttcgacccctt
cgtgtcattaatagagctccagggcttaaattagtcgtacaaacccttctttcttcactc
aagcccatagggaatattgtattgatatgctgtaccttttttatcatttttggaatactt
ggtgttcaattattcaagggtatattttattactgcgaagggccgcatgccaacatcgtt
aaaaataagactcaatgtctagaactcagtgataaagggaatcgctggataaaccacaaa
tacaattttgacaacttgggccacgctctcatgtccctttttgttctctcatccaaggat
gggtgggtgaacatcatgtaccaagggttggatgctgttggactcgaccagcagccgaaa
gagaatttcaacgaatggagattaatttactttatcagttttttactacttgttgggttc
tttgtactcaacatgtttgtgggagtggtggtggagaacttccataggtgtcgagcagag
caagagaaggaagagcgtgctcggagagctgcgaaaagggctaaaaaaattgaggaaagg
cgaagacgaatgatgaaagcaccttactacattcactattcccattatcgtctttctgtt
cacaaagtggtcacctcaaaatattttgaccttgcaatctctgccgttataggcctcaat
gtcatcacaatggcaatggaattttatatgatgcctgtcgttttagcctatgccttaaaa
gtttgcaattatttttttacagcagtttttatattagaggcggggatgaaaatatcagct
cttggaattggtagatatctaagtgataaatggaatcagttggacgtggtcatagtttta
ctttctgttgttggaattgtattagaagaaatcaaatctgatatgatgcccattaatccc
accattatgagggtcatgagagtacttcgaatagccagggttttaaagctactgaaaatg
gcaaaggggattagagctttactagatacagtgatgcaggcactgcctcaagttgggaac
ctaggacttttgttctttctgttattttttatattcgcggcacttggtgtggaaatgttt
ggaagattagagtgtgacgacgatcatccttgtcagggcttgggagagcatgcacatttt
cgatcctttggcatggctttcctcactttatttagaattgctacaggagacaactggaat
gggataatgaaggatacacttcgtgaagaatgtgaaaatggggatgattgtctcaggaac
tgctgtgtctctccctactttgcacctttattctttgttgtgttcgttctgatggcccaa
ttcgtccttgtcaatgttgtagttgccgttttgatgaagcatttagaagaatctcataaa
cagatggaagacgatgttgaagtggagctggaattagaaaaacagctcggtttggcccat
gaattattttaa
DBGET
integrated database retrieval system
