Lepeophtheirus salmonis (salmon louse): 121114452
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Entry
121114452 CDS
T08214
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121114452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsm03041
]
121114452
03009 Ribosome biogenesis [BR:
lsm03009
]
121114452
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121114452
Spliceosome [BR:
lsm03041
]
Complex A
U1 snRNP components
U1 related factors
121114452
Complex B
121114452
Ribosome biogenesis [BR:
lsm03009
]
Eukaryotic type
Pre-60S particles
Helicases
121114452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF6505
Motif
Other DBs
NCBI-GeneID:
121114452
NCBI-ProteinID:
XP_040564362
LinkDB
All DBs
Position
3:complement(17294508..17298215)
Genome browser
AA seq
571 aa
AA seq
DB search
MSRSQNGSGSYGRGGGGTRFNSGGRYGDRGGQSRFGSDRGGRFGGDRNGGMNKGKNPGQN
LRKPVWESYDLVPFEKHFYNPHPNILNAEKKTVEAYRDEKEITIVRGHNIPNPILDFTEA
GFPDYILKEFKRQGFERPTAIQSQGWPIALSGSNMVGIAMTGSGKTCGYLLPGIIHVNNQ
PYLEEGDGPIVLVLAPTRELAQQIQEVASEFGRTSRIKSTCIFGGAPKGPQLRDLERGCE
IVIATPGRLIDILEMGKINMRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWS
ATWPKEVRRLAEDFLDDYVHINIGAATLHANHNILQIVDVCEDFQKEEKLARLLEEIGCE
PHNKILIFVETKRKADELTRLMRRDGYPAMCIHGDKQQKERDWVLGEFKHGATTILVATD
VAARGLDVDDVKFVINYDYPNNSEDYIHRIGRTGRKDRTGTAYTLFTSGNSAKAKDLVDV
LLEAKQVVNPKLQELAQCSGFNRRAAGGRGGRYSGSSRYGGGGGGSRYGGGGDRNGGSRY
GGNSNSGSRFNGGARYGGSGGPPRTGGDRRW
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgttctcaaaatggtagtggatcctatggtcgaggtggtggtggaacccgcttt
aattctggaggtcgatacggtgaccgtggtgggcaaagtcgatttggaagtgatagagga
ggcagatttggaggagatcgcaatggcggaatgaacaaaggaaagaaccctggacagaat
ttgagaaaacccgtctgggaatcttacgatttagttccctttgagaagcatttctataat
cctcatcccaatatacttaatgctgaaaagaagacagtggaggcttatagagacgaaaag
gagatcactattgttagaggacacaatattcccaatcctatattagatttcacggaagca
ggattcccagactatattttaaaagaattcaagaggcaggggtttgagcgtcctactgct
attcaatcacaaggatggcctattgccctatctggttctaatatggttggtattgcgatg
acaggttcaggaaaaacttgtggttatcttctgcctggaattattcatgtcaataatcag
ccttatcttgaagagggagatggtcctattgttttggttcttgcaccaactcgtgaattg
gctcagcaaattcaagaagtcgctagtgaattcggaagaacttctcgtattaagagtaca
tgtatttttggaggtgctcccaaggggcctcaactcagggatttagagcgtggctgtgaa
atcgtcatcgctacccctgggcgtctaattgatatcttggagatgggtaaaattaatatg
cgacgttgcacatatttagttcttgacgaggctgataggatgttggatatgggatttgaa
cctcaaattcgtaaaattattgaacaaattcgcccagacagacaagtgttgatgtggtca
gctacttggcctaaagaagtgagacgcctggctgaagactttcttgatgattatgttcac
ataaacataggagcagctacgctccatgcaaaccacaacattcttcaaatcgtagatgta
tgcgaggatttccagaaagaggagaaattggctcgtcttttggaggaaataggttgtgaa
ccacataataagattcttatatttgttgagaccaaaagaaaggctgatgaattgacgcgt
ttgatgcgacgtgatggttatcccgctatgtgtattcatggtgacaagcaacagaaagaa
agagactgggttttgggggaatttaaacacggtgcaactacaatacttgtagccactgat
gttgcagctcgtggactagatgttgatgacgttaaatttgttattaattatgactatcca
aataattctgaagactatattcatcgaatcggaagaactggtagaaaagatagaactggt
accgcctatactttattcacatctggcaacagtgcaaaggctaaggatctagtcgatgtt
ttattggaagctaagcaagtagtaaatcctaaattacaagaacttgcccaatgtagcggg
tttaatcgtcgtgctgctggtggtagaggtggtcgatatagcgggagctctcgttatggt
gggggcggtggaggctcacggtacggtggtggtggtgatcgtaatggtgggtcacgctac
ggtggtaacagtaatagtggatctaggtttaatggaggtgcaagatatggtggtagtgga
ggtcctccaaggacaggaggggatcgccgttggtga
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