Lepeophtheirus salmonis (salmon louse): 121114725
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Entry
121114725 CDS
T08214
Symbol
Not3
Name
(RefSeq) CCR4-NOT transcription complex subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121114725 (Not3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121114725 (Not3)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121114725 (Not3)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121114725 (Not3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
BLOC1_2
Motif
Other DBs
NCBI-GeneID:
121114725
NCBI-ProteinID:
XP_040564703
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Position
3:23336422..23341664
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AA seq
686 aa
AA seq
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MAAGRKLQAEIDRCLKKVGEGVEKFEETWQKVHNASNTNQKEKYEEDLKKEIKKLQRLRD
QIKTWLASAEIKDKSILMDKRKLIEQQMERFKVVERETKTKAYSKEGLTSGLKLDPAEKE
RYEITSWLKQCIEDLNLQMDGFEAEIESLGTTKKKKNRNDEKIEEFNIHLDKHRDHVQKL
ETLLRMLDNETVDMGQIKDIKDDIEYYIENCQDPDFTENECMYDDIDGLEEMLLDVSNVG
GHDNNTNSMDASETMSTNSASSPVPPQSCNSSTNNHSNEHHHHHSEDKRRHKSSSEETKF
NFNNLNDSGSSNTASSISSTRVTSNNKQISSSSVIIGASAPIISKSTSTPIKGNGSNNSS
PSNGGGIGLLSAGPPNFAAAAAQAAAVAQQNGHTTPSNISLSELCVRSMSPLFNAPAVSS
SSSSALVQPQHNSFPPSVVGVSTSSITSAIVVAPEKSDTTPNLSEDTFSSLKSMAQTAID
RAGLKLPLSESQQQPQVSISVSQQSIHNAGGSSSNSSSNLKGEAYIPPLLGVAPLGPVPL
NKETQFQYQMLEAANSHMPHPSDSERLRPYLPRNPCPTPPHYPQVPPGGFDTIDYFQRLS
TETLFFIFYYMEGTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKIINDEYEQGTYIYF
DFEKWGQRKKEGFTFEYRFLEDKDLN
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaggtcgtaaattacaagctgaaatcgatcgttgcttaaagaaagttggggaa
ggagtcgaaaagtttgaagaaacttggcaaaaagttcataacgcttccaacacgaatcaa
aaggagaagtacgaagaggatctgaagaaagagatcaagaaactccagagactgcgagat
caaataaagacatggctcgcctctgcggaaatcaaagacaaatcgatactgatggacaag
cggaaactgatcgaacagcaaatggagcgcttcaaggtagtggagagggaaacgaagacg
aaggcctattccaaagaaggcctcacctccggtctcaaactagatcccgcagaaaaagaa
cgctacgaaatcacttcttggctaaagcaatgcatagaagatcttaaccttcaaatggat
ggttttgaagcggaaattgaatctctgggtacaacaaagaagaagaaaaatcgcaatgat
gaaaaaattgaagagttcaacattcatctagataaacatagagatcatgttcaaaaatta
gaaacccttctaagaatgctcgataatgaaactgttgatatgggacagattaaagatatt
aaggatgatatagaatattacatagagaattgtcaagacccagatttcaccgaaaatgag
tgcatgtatgacgatatcgatggtttagaagaaatgttactagatgtttcaaatgttggt
ggtcatgataataatacaaattctatggatgcatcagaaaccatgtcaactaactcagca
agttcgcctgttcctccccaatcatgtaatagtagtaccaacaatcattccaatgaacac
caccatcatcatagtgaggataagagacgacataagtcttcaagtgaagaaactaaattc
aatttcaacaatcttaacgatagcggatcctccaatacagcatcttcaatctctagtact
agagtcacttccaataataaacaaatttcctcctcatcggtaataatcggagcttcagcg
cctattatttctaaaagcacctccactcccattaaaggaaatggcagcaacaactcttca
cccagcaatggcgggggcattggacttctgtcagcgggtccgccaaattttgcagctgct
gctgctcaagcggctgcagttgcccaacagaatggtcacacgactccgtcaaatattagt
ttgtcagagctctgtgtaagaagtatgagcccattgttcaatgcacccgcggtttcgtca
tcttcctcatccgctttagtccaacctcagcataattctttccctccttcagtggtggga
gtatcaacatcatctataacatcagccattgttgtcgcacctgagaaaagtgatacaaca
cctaatttgagtgaagatacattttcttctctcaagtccatggcgcagacagcaattgat
agagctggtttgaagctacctttatctgaatcccagcaacaacctcaagtgtctattagt
gttagtcaacaaagtatccataacgcgggtggatcaagcagtaattcttcgagtaactta
aaaggtgaagcttatattcctccattgttaggagtagctcctcttggaccggttccactg
aataaagagactcaatttcaataccaaatgctcgaggccgccaactcacatatgccgcat
ccatcagactctgaacgcttacgaccttatctccctagaaacccatgtcctactcctcca
cattaccctcaggttccacctggtgggtttgatacaattgactacttccaacgtttatca
actgaaacgcttttcttcatcttttattatatggaaggaacaaaggcacagtacctctct
gcaaaagcacttaaaaaacaatcctggaggtttcatacaaagtacatgatgtggtttcaa
cgacatgaagagccaaaaattatcaacgatgaatatgaacagggaacctacatttacttt
gattttgagaaatgggggcaacgaaagaaagaaggatttacattcgagtatcgatttctt
gaagataaagacttgaactga
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