Lepeophtheirus salmonis (salmon louse): 121115062
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Entry
121115062 CDS
T08214
Symbol
U2af50
Name
(RefSeq) splicing factor U2AF 50 kDa subunit
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121115062 (U2af50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsm03041
]
121115062 (U2af50)
Spliceosome [BR:
lsm03041
]
Complex A
U2 snRNP components
U2 related factors
121115062 (U2af50)
Complex B
121115062 (U2af50)
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Tri3
Motif
Other DBs
NCBI-GeneID:
121115062
NCBI-ProteinID:
XP_040565154
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All DBs
Position
3:38868735..38870236
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AA seq
454 aa
AA seq
DB search
MGEDKMKVDDNEEDNHKGESYHRRDDRDRRRRSRSRSRERRRRSRSRDRRRRPSRDRGGG
GGGGGGGNGGGVGTAEVSRKSRRRKPSLYWDVPPPGFEHITPMQYKAMQAAGQIPATLVS
ETHQAAVPVVGSTITRQARRLYVGNIPFGVSEDEMMDFFNQQMHLSALAQADGNPILACQ
VNLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKLRRPHDYQPMPGMSENPNFNVPGVV
STVVPDSAHKVFLGGLPNYLNEDQVKELLTSFGQLRAFNLVKDSATGLSKGYAFCEYVDV
NITDQAIAGLNGMQLGDKKLIVQRASVGAKNAMNVAPVQIQVPGISGIAGPGQATEVLCL
LNMVTPDELTDDDEYDDIVEDIRDECSKFGVVKSLEIPRSVPGVEVPGCGKVFIEFSTLA
ECQKAQHSLTGRKFSNRVVVTSYFDPDRYHRREF
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagataagatgaaggtggatgataacgaagaagacaaccacaaaggtgaatcc
tatcacagaagagatgacagagatcgtcggcgaaggagtaggagtcgtagtcgagaaaga
aggagaagatcccgttctagagataggagaaggcgtccaagtagagatcgaggaggaggc
ggcggcggtggtggtggcggcaacggcggaggagttggaacagctgaggtatccagaaag
tctagaaggaggaaaccctcattatactgggatgtacctcctccaggatttgagcacata
actcccatgcaatacaaagcgatgcaggctgcagggcaaataccagcaactctagtgtca
gaaacacatcaagctgcagtgcctgttgtagggtcaaccataacaagacaagctcgtaga
ctctatgttggaaatattccatttggtgtttctgaggatgaaatgatggacttcttcaat
caacaaatgcatctatcagcattagctcaagcagacggtaatcctattttggcatgtcaa
gttaatcttgacaaaaacttcgcatttttggaatttcgttctattgatgaaacaacacag
gctatggccttcgatggcattaattttaaaggtcaaagtttaaaacttaggcgtccacat
gactatcaacctatgccaggcatgtctgagaaccccaattttaatgttccaggagtagta
agtacggttgtgccagattctgcgcacaaagttttcttgggtggacttcccaattatttg
aatgaagatcaagtcaaggaacttcttacttcttttggtcaactacgtgcttttaattta
gttaaagattcagcaaccggtttaagcaaaggctatgccttctgtgaatatgttgatgta
aatattacagatcaagcaattgcaggtcttaatggcatgcaacttggagataaaaaacta
attgtacagcgagcaagtgttggggcaaagaatgcaatgaatgttgctcccgttcagatt
caggtacctggaatttcagggattgctggtccaggccaggctacggaagttctatgtctg
ctcaatatggttactccagatgagctcaccgatgacgacgaatatgatgatattgttgag
gatattcgagatgaatgctccaagtttggtgtcgttaaaagtttagaaattcccagatcc
gttcctggtgttgaagttccaggttgtggcaaagtatttatcgagttttcgacgttggcg
gaatgccagaaagctcaacattctcttacaggaagaaaattttcaaatcgtgtggtcgtt
acatcatattttgacccagatcgctaccatcggcgtgagttttaa
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