Lepeophtheirus salmonis (salmon louse): 121115065
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Entry
121115065 CDS
T08214
Name
(RefSeq) ribosomal RNA small subunit methyltransferase NEP1
KO
K14568
rRNA small subunit pseudouridine methyltransferase Nep1 [EC:
2.1.1.260
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121115065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lsm03009
]
121115065
Enzymes [BR:
lsm01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.260 rRNA small subunit pseudouridine methyltransferase Nep1
121115065
Ribosome biogenesis [BR:
lsm03009
]
Eukaryotic type
90S particles
Other 90S particles
121115065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EMG1
Motif
Other DBs
NCBI-GeneID:
121115065
NCBI-ProteinID:
XP_040565157
UniProt:
A0A0K2T245
LinkDB
All DBs
Position
3:38861880..38864020
Genome browser
AA seq
246 aa
AA seq
DB search
MGKKRKLEREEAEEAAAKKQKTPLDSGIKEVSRLASKKEGRLIVILYAAHLEIIKSDKKS
FDLLNSDQHTGFIRKTGRQLTDCRPDITHQCLLMLLDSPLNRAGLLQVYIQTAKNVLIEI
NPQTRIPRTFKRFSGLMVQLLHKFSVRASDSGGLKLLKVIKNPITDHLPPGIRKICMSFS
SKEVVKPADIIPKNPEPICVVIGAIAKGAINPDYTDQDLRIGNYPLSAALTCTKITSAFE
EAWGVF
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaagcgaaaactcgagagagaagaagcagaagaggccgctgcaaagaaacag
aaaactcctctggattctgggatcaaggaagtgagtcgtcttgcatccaaaaaagaggga
agactcattgtaattctctatgctgcgcacttagagatcatcaagtcggacaagaaatcc
tttgatcttctcaattcggatcaacacacgggttttattcgaaaaactggccgacagcta
acggattgtcgtcctgacataacacatcaatgtctgctcatgctcttagattcaccccta
aatcgagcgggtttattgcaagtctatatacaaactgctaaaaacgttctcattgagatt
aatccccaaactcgtattccaaggacctttaaacgcttttcaggtcttatggtacaactt
ctccacaagtttagtgtgcgagcaagtgattccggtggacttaaattactcaaagtcatt
aaaaaccccatcacagatcatcttcctccagggattcgtaaaatttgtatgagcttctct
tctaaagaagtggtcaagcctgcagatatcatccctaaaaatcctgagcccatttgtgta
gtgattggggctattgctaaaggagcaattaatcctgactatacagatcaagatttaaga
atcggcaattatccactgagtgctgctcttacttgtactaaaattacttctgcctttgaa
gaagcctggggtgtcttttaa
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