Lepeophtheirus salmonis (salmon louse): 121115648
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Entry
121115648 CDS
T08214
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121115648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121115648
03036 Chromosome and associated proteins [BR:
lsm03036
]
121115648
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121115648
Chromosome and associated proteins [BR:
lsm03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121115648
PBAF complex
121115648
GBAF(ncBAF) complex
121115648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
SWIB_eIF2D
Motif
Other DBs
NCBI-GeneID:
121115648
NCBI-ProteinID:
XP_040565672
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All DBs
Position
4:22811989..22813728
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AA seq
455 aa
AA seq
DB search
MSEVYGSAPVLSLEEGAGVSMKRMIPSSGGPISGKGSSWTSPSAPSAPSAPSASTTSSSS
KKKKRGSERVVGVKGEKGLEGVVDSEAYMDLVIFEKKLDSTIMRKRLDIQEALKRPVKQK
RKLRIFLSSIFLPGKEEEDGTSSGGSWELRVEGRLLTDEKLPSDFSRNKKKFSSFIKSLV
IELDKEMYGPDNYLVEWHRSPSTQETDGFQVKRPGDKNVRCTIILILDHQPLQYKVDPRL
ARLLGLHTQTRPVIVSALWQYIKSHNLQDPHEREYICCNSFLKQIFQTDKMKFAELPQRL
NPLLYPPDPIVINHVISVEDFRHSDQKKTACFDIDVELDDTLKTQMNSFLLSTSSQQEIL
SLNSKIHETVNSIVSLKTSREFYLRFANNPQLFISKWITSQSRNVKAITDTKDYEQRKTD
FYYQAWAQEAVCRYFYNQVKKRGAELGISEGFFDI
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaggtgtacggttcagctcctgtcttgtcgttggaagaaggagcgggtgtttcc
atgaaacggatgattccgtcttctggagggcctatttccgggaaggggagttcttggact
tctccctccgccccctccgccccctccgcaccctccgcctcgaccacaagctccagctcc
aagaagaagaaacggggaagtgagcgagttgtgggagtgaagggtgagaaaggactggag
ggagttgtggactctgaagcctacatggaccttgtcatatttgaaaagaaattggactcc
accattatgaggaaacgattggacattcaagaagctctcaagagacccgtgaaacaaaaa
cggaaacttcggatcttcctttctagcattttccttcctgggaaagaagaagaggatggg
acatcttcaggaggatcctgggaacttcgagtggaaggaaggctcttgacagatgagaaa
cttccttcagacttctcaagaaataagaaaaagttctcttcttttattaaatctttagtg
attgaattggataaggaaatgtatggtcctgataattacttggtagagtggcacagatca
ccttcaacacaagagactgatggattccaggtcaaaaggcctggagataaaaacgttcgc
tgtaccataattcttatacttgaccatcaacctttgcaatataaagtagatccccgcctt
gcacgactactaggtttacacactcaaacccgacccgtcattgtttctgccttatggcag
tacattaaatctcataatctgcaggatccccatgaaagggagtacatatgctgtaactca
tttctcaagcagatatttcaaacggacaagatgaaatttgctgaattacctcaaagatta
aatcctttgctatatcctccggatccaattgtcatcaatcatgtaatatctgtagaagat
ttcaggcattctgatcaaaagaaaacggcttgcttcgatattgatgtagaattagatgac
acattgaagacacaaatgaacagttttcttttaagtacttcgtcacagcaagaaatactc
tcattaaatagtaaaatacatgaaactgttaactctattgtttcattgaagacaagtcga
gaattttatctgagattcgctaataatccacaattattcattagtaaatggattacgtct
caatcacgaaatgtgaaggccatcacagatacaaaggattacgagcaaagaaaaacggat
ttttattatcaggcttgggcccaagaagctgtctgtcgctatttttataaccaagtcaaa
aaaagaggagccgaactcgggatttccgagggattctttgatatttag
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