Lepeophtheirus salmonis (salmon louse): 121115827
Help
Entry
121115827 CDS
T08214
Symbol
pea
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121115827 (pea)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsm03041
]
121115827 (pea)
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121115827 (pea)
Spliceosome [BR:
lsm03041
]
Complex C
Other components
Step II factors
121115827 (pea)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
T2SSE
AAA_19
nSTAND3
nSTAND_NTPase5
ABC_tran
AAA_30
PhoH
NB-ARC
Flavi_DEAD
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
121115827
NCBI-ProteinID:
XP_040565919
UniProt:
A0A0K2THE8
LinkDB
All DBs
Position
1:complement(8211575..8215565)
Genome browser
AA seq
1205 aa
AA seq
DB search
MDELLRLEKLSLISKVCTELENHYNINDKDLAEFIIDLAERNKHFNDFKKALEENGAEFS
DSFMENIVRLIRHMTTTTAPFISKKDEIKEKLSVLSLPNKPIEKIVEKKSDDVEERKRSS
PYREKKRETRDYAYREKDTKVEERRNRSRSRDRHRRRRDRSRSRSRSRSRKSHKKSKIRS
PEHKRRRSRDRRRRRSRSSSSSSPENHQSERRRPRPSGVSDENAKEFQVYKGRVANITNF
GCFVGLEGFRKKTEGLVHISQLSQVRVNSVEEVVKRNQQVYVKVLNMIGSKMSLSMKDVD
QSTGEDLHPEANINKSNDTSQKGAPSFLTGGNADDFKNPDRPLTRDDPLFDMLQRKKVGD
LDKEDDPSTQKKVNRMSSPDKWELNQLIAANAIDKTEHPDYDDATGLLPKIESDEEDIEI
EMVEDEAPFLKGHGRMVNDLSPVRIVKNPDGSLAQAAMMQSALSKERREQKMQERQAVEA
QANQLSQNTKSWQDPMSSSAPGGHSNTGDFKHASQENMPEWKKHIIGGSKGSFGKKTNLS
MLEQRRSLPIYKLKDELIKAINDNQILIVVGETGSGKTTQLTQYIAEAGFTAKGKIGCTQ
PRRVAAMSVSKRVAEEFGCLLGQEVGYTIRFEDCTSNETVIKYMTDGMLLREALIDSDMS
GYSCIMLDEAHERTISTDVLFGLLKKAVKLRPELKLIVTSATLDAVKFSEYFFEAPIFTI
PGRTFPVEILYTREPETDYLETSLITIMQIHLNEPPGDILLFLTGQEEIDTACECLFERM
KSLGPEVPDLIILPVYSALPSEIQSRIFDPAPPGSRKVVIATNIAETSLTIDGVYYVVDP
GFVKQKVYNSKTGMDALVVTPISQAQAKQRSGRAGRTGPGKTFRLYTERAFRDEMLSTPV
PEIQRTNLAATVLQLKAMGINDLIGFDFMDAPPVEAMIHALEMLHTLSALDDEGLLTRLG
RRMAEFPLEPNLSKMLIMSVTLQCSDEILTIVSMLSIQNVFYRPKEKQAIADQKKSKFNQ
PEGDHLTLLAVYNAWKNNKFSSAWCYENFVQMRTLKRAQDVRKQLLGIMDRHKLDVVSCG
KSITRVQKAICSGFFRNAAKKDPQEGYRTLVDSQIVAIHPSSSLFHRQPEWVVYHEVVQT
TKEYMREVTAIDPKWLVEYAPAFFRFSDPTRLSNFKKNQRIEPLFNKYDENKDAWRISRT
RKRRN
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atggatgaattgctacgtctggagaaactctctcttatttccaaagtatgtacagagttg
gagaatcattataacatcaatgacaaggatttagcggagttcatcatagatttagcagaa
agaaataaacattttaacgattttaaaaaagcattggaagaaaatggagcagagttctct
gattcttttatggaaaatattgttcgactcattcgtcacatgaccacaaccaccgctcct
ttcatatccaagaaggatgaaatcaaagagaaactctcggttttaagtttaccgaacaaa
cccatcgagaaaattgttgagaaaaaaagtgatgatgtcgaggagagaaaacgatcgtct
ccctaccgcgaaaaaaaacgtgaaacccgtgattacgcctatagagagaaggacaccaaa
gtggaagagagacgaaacaggtcgagatctagagatcgtcatagaagaagacgagatcga
tccagaagtcgttcacggagtcgcagtcgtaaaagtcacaaaaaaagtaaaatacgctct
cctgaacataaaagacggcgctctcgggaccgaagacgaaggcgtagtaggtcatcctcc
tcctcttctcctgagaatcatcaatctgaaagaagacgtccaagacccagtggtgtatct
gatgaaaatgctaaagaatttcaggtttataagggtagagtggctaatattactaacttt
gggtgctttgttggtcttgaaggctttcgtaaaaaaactgagggccttgttcatatatcc
caattgagtcaagtgcgtgtcaattcggttgaggaagttgtcaaaaggaaccaacaggtc
tatgttaaggtgttaaacatgattggttctaaaatgtcattgtccatgaaggatgtggat
caaagcactggagaagacttgcaccctgaggcaaatattaataaatcgaatgatacgtct
caaaaaggggcccccagtttcttaactggtggaaatgcggatgattttaaaaatcctgat
agacccttgactcgggatgaccccctttttgatatgctccaaagaaaaaaagttggagat
cttgataaagaagatgatccttctacacagaaaaaagttaatcgaatgtcaagtccagat
aaatgggaacttaatcaactcatagctgctaatgcaattgataaaactgagcatccagat
tatgacgatgcaacaggtttgctacctaaaattgaaagtgacgaagaggatatagagatt
gaaatggtggaagatgaggctccctttcttaagggacatggtcgaatggttaacgattta
agtccagtgcgaattgtaaaaaatcctgatggatctcttgcacaagcagcaatgatgcag
tccgctttatcaaaggaacgtagagaacaaaaaatgcaagaaagacaggctgtcgaagct
caagcaaatcaattatcccagaatacaaagtcctggcaagatccaatgtctagtagtgca
cctggaggtcattcaaacacgggagattttaaacatgcttctcaagaaaacatgccagaa
tggaagaaacacattattgggggatctaaaggatctttcggcaaaaaaaccaatttgagt
atgttagaacaaagacgaagtcttcctatttataaattaaaggatgagcttatcaaggcc
atcaatgacaatcaaattcttattgttgtcggagaaacaggatctggtaaaaccacacaa
ttaacacaatatattgccgaagcaggatttacggctaagggtaaaattggatgcacacaa
ccacgtcgtgttgcagctatgtctgtgtctaaacgtgttgctgaagaatttggttgttta
ctaggccaagaagttggatacaccattcgttttgaggattgcacttccaacgaaactgtt
ataaaatacatgactgacggtatgttattaagagaagctcttattgattcagatatgagt
ggatattcatgtattatgttggatgaagctcacgaaagaaccattagtacagatgtactg
tttggacttttgaaaaaagctgtgaaacttagaccagaattaaaattaattgtaacatca
gcgacactagacgctgtgaaattttctgaatacttttttgaggctccaattttcaccatc
cctggacgaacgttccctgttgaaatattgtatacacgtgaacctgagacagattatttg
gaaacctctctaattactataatgcagattcaccttaatgaacctcctggtgatattttg
ctctttttaactggtcaggaagagattgatactgcttgtgaatgcttatttgagcgtatg
aaatctcttggtcctgaagtacctgatcttattattcttcctgtttactctgcccttcct
tcagaaatacaatctcgcatattcgatccggcacctcctggatcacgtaaagttgttatc
gcaacaaatattgcagaaacttctctcacaatcgatggggtctattatgttgttgatcca
ggttttgttaaacaaaaagtgtataactccaaaactggcatggatgcgctagttgtaact
ccaatatcacaggcgcaagcaaaacaaagatccggaagagctggtagaactggaccagga
aagactttccgactatacactgagcgagcgtttagagatgaaatgttatctacaccggtt
cctgaaatccaacgtaccaatcttgcggctactgttcttcagttgaaggcaatgggcatc
aatgatttaattggttttgatttcatggacgctcctccagttgaggcaatgattcacgca
ttggaaatgcttcatactcttagtgcactagatgacgaaggccttcttacccgccttggc
cgtcgaatggcagaattccctcttgagcctaatctatcaaaaatgctaattatgagtgtt
acattacaatgctctgatgaaattttgacgattgtgagtatgttgagcattcaaaacgtt
ttctatcgacctaaagagaagcaagccattgctgatcaaaagaagtctaaatttaatcaa
cccgagggtgatcatttaaccttacttgctgtttataatgcatggaagaacaataaattt
tcatcggcatggtgctacgaaaattttgttcaaatgcgtactttaaagcgtgctcaagat
gtacgcaaacagttgttgggaattatggatcgacacaagttggatgttgtttcatgtggt
aaatcaattactcgagtacaaaaagcgatatgctctggttttttccgtaacgctgccaag
aaagatccacaagagggctatagaacacttgttgactcacagattgtggctatacatccc
tcaagctctctatttcacagacaacccgagtgggttgtctatcatgaagttgtacaaaca
acaaaagagtatatgagagaagttacggctattgaccccaagtggttggttgagtacgca
cccgccttttttaggttctctgatccaacaagactctccaactttaaaaagaatcaaaga
attgagccattatttaataaatatgatgaaaataaggatgcttggcgtatctctagaact
aggaaaagaaggaactag
DBGET
integrated database retrieval system
