Lepeophtheirus salmonis (salmon louse): 121116057
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Entry
121116057 CDS
T08214
Symbol
Prp8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121116057 (Prp8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsm03041
]
121116057 (Prp8)
Spliceosome [BR:
lsm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121116057 (Prp8)
Complex C
U5 SnRNP specific factors
121116057 (Prp8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
121116057
NCBI-ProteinID:
XP_040566203
LinkDB
All DBs
Position
4:45527336..45535454
Genome browser
AA seq
2374 aa
AA seq
DB search
MAGLPPPGFQFYPGPPHPAWAAMMAQQQAAQRAAFQAAAAQQQSVPGPVSQEHPPPPPPK
ENLEDKAKKWHQLRCKRYAEKRKFGFTDAQKEEMPPEHVRKIIRDHGDMSSRKFRHDKRV
YLGALKYIPHAVLKLLENMPMPWEQIRDVDVLYHITGAISFVNEIPWVIEPVYSAQWGSM
WIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNVLDVEPLEAIRIDLDENGEDAAISQW
FYESSQPLIDSVRVNGSTYRKWNLTLPQMACLYRIANQLLTDLVDDNYFYLFDLKSFFTA
KALNVAIPGGPKYEPLIKDPTQLDDDWNEFNDINKIIIRQPIRTEYRIAFPYLYNNLPHF
VHLSWYHTPNVVFIKTEDPDLPAFYFDPLINPISHRHSISNQNKLESLLPEDDEEFEIPE
ECQPFLLDCPLYSDNTANGVSLLWAPRPFDTRSGRTRRALDIPLVKNWYREHCPPGQPVK
VRVSYQKLLKYYVLNALHHRPPKPQKKRNLFRSFKATKFFQSTSLDWVEVGLQVCRQGYN
MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLIVDAHV
QYRLNNVDAFQLSDGIQYIFAHVGQLTGMYRYKYKLMKQIRMCKDLKHVIYYRFNTGPVG
KGPGCGFWAPGWRVWLFFMRGVTPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFD
LELRASVMHDIIDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPTPIENMILRY
IKMKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYIS
PEEAVAIYTTTVHWLESRAFAPIPFPPLSYKHDTKLLILALEQLKEAYSVKSRLNQSQRE
ELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLIPVYDVEPLEKITDAYL
DQYLWYESDKRRLFPPWIKPADTEPPPLLTYKWCQGINNLQDVWESADGECNVMMECKLE
KLYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVVNYKDMNHTNSYGIIRGLQFASFVVQ
YFGLVNDLLILGLNRAAEMAGPPKMPNEFLTFQNIETESSHPIRLFSRYVDKIHMFFRFS
SEEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDSRMRLMKHDVNLGRAVFWDIKNRLP
RSVTTIEWESSFVSVYSKDNPNLLFSMSGFECRILPKIRTSHEEFTHRDGVWNLQNEVTK
ERTAQCFLRVDNDAMAKFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQ
ELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRW
SKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWEAEFIDSQRVWAEYALKRQEAAAQNRK
ITLEDLEDSWDRGIPRISTLFQKDRHTLAYDKGWRVRTEFKAYQVLKQNPFWWTHQRHDG
KLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQ
RSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLW
QKVHESVVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAYKWNVSKP
SLLADTKDTMDSTTTQKFWLDVQLRWGDYDSHDVERYARAKFLDYTTDNMSIYPSPTGVL
ISIDLAYNLHSAFGNWFPGCKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPY
LSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLYLKII
HTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNI
VIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLRTISSYTAFSRLILILRA
LHVNNDRTKIIIKPDKTTITEAHHIWPSLSDDEWIKVEVALKDLILADYGKKNNVNVASL
TQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNY
ETNTFSSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVMISDLRT
QISAYLYGISPPDNPQVKEIRCLVLAPQWGTHQTVHLPSMLPQHEYLKELEPLGWIHTQP
NELPQLSPQDISTHSRVMSEHTSWDGEKTIVITCSFTPGSCSLTAYKLTPSGFEWGKNNT
DKGNNPKGYLPSHYEKVQMLLSDRFLGFFMVPSHGSWNYNFMGVRHEPSMKYELSLANPK
EFYHEVHRPSHFMNFASFEEGVDWNGADREDMLA
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atggctggactccctcctccaggctttcagttttaccctggacctcctcatccagcatgg
gctgcaatgatggcgcagcaacaagcggcacaaagagctgcttttcaggccgctgcagct
caacaacaatccgtgcccggtcccgtgagccaggagcatcccccgccgcctcctcccaaa
gagaatctggaggataaggccaagaaatggcatcaactccgatgcaagcgctatgcagag
aaaaggaaatttgggttcacggacgcccaaaaggaagagatgcctccggaacatgtccgt
aagatcatccgtgatcatggggatatgagttctcgcaagttccgtcatgacaagcgcgtc
tatttgggtgcgctcaaatatattccacacgccgttctgaaactgctggagaatatgccc
atgccctgggaacaaatccgcgatgtggatgtgctctatcacatcacgggagccatttcc
tttgtcaatgaaataccctgggtcattgagcccgtttacagtgcacaatggggctccatg
tggattatgatgcgccgagagaaaagagatcgccgccatttcaaacggatgcgatttcct
ccattcgacgatgaagaacccccgctggactatgctgacaatgtccttgatgtggagccc
ttggaagcgatccgaattgatttagatgaaaatggcgaggatgcagctatttcccaatgg
ttctatgaatcctctcaacccctcattgatagtgttcgagtgaatggatccacataccgg
aaatggaacttgacactacctcaaatggcatgtctttatcgaatagccaaccaactcctc
acagatctcgtggatgataattatttttatttatttgaccttaaatcttttttcacggca
aaggcacttaatgttgcaataccgggtggtcccaaatatgagccccttatcaaagatcct
acacagttggacgatgactggaatgagttcaatgacatcaataaaatcatcattcgacaa
cccattcgaacagagtataggattgcatttccatatctatacaacaacttaccccatttt
gtacatctctcttggtaccatacacccaatgttgtattcatcaaaaccgaagatccggat
ctacctgcattttattttgatcctctcatcaatcccatttctcatagacattctatttct
aatcaaaataagcttgaaagcttgctccccgaggatgatgaagaatttgagatcccggaa
gagtgtcaaccttttctcttagattgccctctatacagtgataatactgctaacggtgtc
tcactactttgggccccaagaccctttgatactcgatctggtagaactcgccgtgctctt
gatattcctttagtcaaaaattggtatcgagagcattgccctcctggccaacccgttaaa
gtacgtgtaagctatcaaaaactactcaagtactatgttttaaatgcacttcaccatcga
cccccaaagcctcaaaagaagagaaatttgttccgttcatttaaagctaccaaatttttc
caatcaacaagtttagattgggttgaagttgggttacaagtctgtcgacaaggatacaac
atgctcaatcttttaattcatcgaaagaacttgaattatcttcatttagattataatttt
aatcttaagccagttaaaactcttaccactaaggagcgtaaaaaatcgagatttggaaat
gctttccatttgtgtcgtgagattcttcgattgaccaaattgattgttgacgctcatgtg
caatatcgactcaataatgtggatgcttttcaactttctgatggtattcaatatattttt
gctcacgttggtcaactgacgggaatgtatcggtacaaatataagctaatgaagcaaatt
cggatgtgcaaggacttgaagcatgttatatattatcgtttcaatactggacctgtaggt
aaaggacctggatgtggtttttgggctcctggatggagagtatggctattcttcatgaga
ggtgtcacgcctcttcttgagagatggttaggaaatttactttctcgtcaatttgaaggt
cgtcattccaagggagttgctaaaactgttacaaaacaaagagtagagtctcactttgat
ctcgaacttcgtgcctcggtcatgcacgacatcattgatatgatgcctgaaggaattaag
caaaataaagcaagaaccattcttcaacatttatctgaagcatggagatgctggaaggct
aacattccttggaaagtaccaggcctacctacccctattgaaaatatgatcttaagatac
attaaaatgaaggctgattggtggacaaatacggcacattataatagagaacgtatacgc
cgtggagcgacagttgacaagacagtatgtaaaaaaaatcttggtcgtcttactaggctt
tacttgaaagcagaacaagaacggcaacataattatttgaaggatggtccttacatttct
cccgaggaagccgttgcgatatatacaactactgttcattggctcgagtctcgggcattt
gctccaataccctttcctcctctttcttataaacacgacacaaaacttcttatccttgca
ttggagcaattgaaagaagcttattcggtcaagtcaagacttaaccaaagtcaaagagag
gagttgggtcttatagaacaggcctatgacaatccgcatgaagcattatctcgtattaag
cgtcatttgttaacgcaaagagcctttaaggaagtggggattgaatttatggacttgtat
tctcatttaattcctgtatatgatgttgaaccactggaaaagatcacggatgcatattta
gatcaatatctttggtatgaatccgataaacgaagactattcccaccgtggatcaaaccc
gctgacaccgagccacctccattgcttacctacaaatggtgtcaaggcatcaataatctt
caagatgtttgggagtctgcggatggtgagtgtaacgttatgatggaatgcaaactcgag
aaactttatgaaaaaattgatttgactcttctcaatcgacttcttcgtttaattgtggat
cacaacattgctgactacatgacggctaaaaataacgtagttgttaattataaggatatg
aatcacaccaactcctatggtattatccgaggtcttcaatttgcctcctttgttgtacaa
tattttggtcttgtcaatgatttattgatattaggtcttaatcgtgcagcagaaatggct
ggacctcctaaaatgccaaacgaatttctcacatttcaaaatattgaaactgagtcttct
catccaattaggctattttctagatatgtcgacaaaattcacatgttcttccgcttttca
tcagaggaggctcgggatttaattcagagatatttaacagaacatccggatcccaacaat
gaaaacatagttggatataataacaaaaaatgttggcccagagactcaagaatgagatta
atgaaacacgacgtaaatcttgggcgtgctgtattttgggatatcaagaatcgtctccct
cgaagtgtaactacgattgaatgggaatcttcgtttgtctccgtatactcaaaggacaat
cctaatttgttgttctcaatgtcaggctttgaatgtcgaattttacccaagattcggaca
tctcatgaagaatttactcatcgtgatggtgtgtggaatcttcaaaacgaggtcacgaaa
gaaaggacggcccaatgtttccttcgagttgataatgatgcaatggctaaatttcacaac
cgtgtacgacaaatcctcatggcatctggttctactacatttaccaaaattgttaataaa
tggaatactgctttaattggattgatgacttatttcagagaggcagttgtgaatacacaa
gagttattagacttgctcgtcaaatgtgaaaacaagattcaaactcgtatcaaaattggt
ctcaactctaaaatgccctcaaggtttcctcctgttgtgttttatacgcctaaggaattg
ggtggcttaggaatgttgtccatgggtcacgttcttattcctcagtcagatttgagatgg
tcaaaacaaactgatgttggaatcacgcatttccgttcaggtatgagccacgaagaggat
caacttattcctaatttgtatcgttatatacaaccttgggaggctgagttcatagattct
cagagagtttgggcagaatatgcattaaaacgacaggaagctgcagctcagaatagaaaa
ataacgctggaggatcttgaggactcttgggatcgtggtattccacgtattagtaccttg
ttccaaaaagatcgacatactctagcttatgataaaggatggagagtaaggactgagttt
aaggcatatcaggttcttaaacaaaatcctttttggtggactcatcaacggcatgatggt
aaactatggaatttaaacaactatcgtacggatatgattcaagctcttggaggtgttgaa
ggtattttggagcatacacttttcaagggaacttatttccctacatgggaaggtcttttc
tgggaaaaagcgtcaggatttgaggaatcaatgaagtacaagaaacttaccaatgcacaa
agatctggtttgaatcaaattccaaatcgtcgatttactctctggtggtctcccactata
aacagagctaatgtctacgttggtttccaagtacaattggatttaactggcatttttatg
cacggcaaaattcctacattgaagatatccttgattcaaattttcagggctcatttatgg
caaaaagtacatgagtctgtcgttatggatctgtgtcaggtttttgatcaggaattggat
gcacttgaaattgaaacagttcaaaaggaaaccattcaccctcgtaagtcatacaaaatg
aattcctcatgtgcagatatattattatttgctgcatataaatggaatgtttctaagcct
tctttattggcggatacaaaagatacaatggattccacgacgactcaaaagttttggctt
gatgtgcaattacgttggggagactacgattctcatgatgttgagcgatacgctcgagcc
aaattcttggattacactacagataacatgtcaatatatccctcacctactggagtattg
atctctattgatttggcttataatttacactctgcttttggaaattggttcccaggttgt
aaacctctaatacaacaggcaatggctaaaattatgaaggctaatcctgccttatatgtg
ttgagagagcgtattagaaaaggtcttcagctctactcatccgaaccaactgagccttac
ctttcttcgcaaaattatggtgaactattctctaatcaaattatttggtttgttgacgat
accaatgtatatcgtgtcacaattcacaaaacatttgaaggcaatctcacaactaaacct
attaatggcgctatctttatttttaatcctagaacagggcaactatacttaaaaatcatt
catacttccgtatgggctggtcaaaagcgtttaggtcagctcgccaagtggaaaactgca
gaagaagttgctgcattgattcgatctctacccgtcgaggaacaaccaaaacaaatcatt
gtcacgcgtaagggaatgttggatcctttggaggtccatttattggatttccctaacatt
gtcattaaaggctctgaattgcaattgccattccaagcctgtcttaaagtagaaaaattt
ggtgatttgattcttaaggctactgaaccccaaatggtactttttaatctgtatgatgat
tggcttagaaccatatcttcttatactgcattctctcgtcttatattaatacttcgagcc
ctccatgtaaataacgatagaaccaagattatcattaaacctgataaaaccactattact
gaagctcaccacatctggccatctctttcagatgatgaatggatcaaagtagaagttgca
ttgaaggacttaattctcgctgattacggaaagaaaaataatgttaacgtagctagtctt
actcaatccgaaatccgtgatattattttgggtatggagatttctgcaccctcggcacag
cgtcaacaaatcgctgaaattgagaaacaaacaaaggagcagtcacaactcactgctacc
acaactcgtacagttaacaaacacggagatgaaattataacttctaccacttcgaattac
gagacaaatacgtttagttccaagacagaatggagagtgagagcaatctctgcgacaaat
cttcatctgagaacaaatcatatctatgtatcatcagacgatatcaaggaaacgggttat
acttatattctaccgaagaatgtcttgaagaaatttgtaatgatttctgatttgagaact
cagattagtgcatatctatacggaatatcccctcccgataatcctcaagtcaaagaaatt
cgatgcttggttcttgctcctcaatggggtacccatcagaccgtgcatttaccctctatg
cttcctcagcatgagtatttgaaggaacttgagccattaggatggattcacacccagcct
aacgaattgccgcaattatcaccacaagatatatctactcattctcgtgttatgagtgag
cacacttcttgggatggtgaaaagacaattgtcattacttgctcattcacccctggatca
tgctctctaactgcttacaaattaacaccgagtgggtttgaatggggtaaaaataatact
gacaaaggaaacaatcctaagggttatttaccgagtcattatgaaaaggttcaaatgctg
ttatccgatcgtttccttggtttctttatggtgccatctcatggctcctggaattataac
tttatgggcgttcgacacgagccttctatgaaatacgaacttagtcttgcaaatccaaaa
gagttctatcatgaagttcaccggccatctcattttatgaactttgcatccttcgaagag
ggagtagattggaacggtgcagacagagaagatatgttggcatag
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integrated database retrieval system
