Lepeophtheirus salmonis (salmon louse): 121116175
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Entry
121116175 CDS
T08214
Symbol
Tif-IA
Name
(RefSeq) LOW QUALITY PROTEIN: RNA polymerase I-specific transcription initiation factor RRN3
KO
K15216
RNA polymerase I-specific transcription initiation factor RRN3
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121116175 (Tif-IA)
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
Transcription initiation factors
121116175 (Tif-IA)
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Gene cluster
GFIT
Motif
Pfam:
RRN3
PSD13_N
Motif
Other DBs
NCBI-GeneID:
121116175
NCBI-ProteinID:
XP_040566345
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Position
4:51492363..51494961
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AA seq
574 aa
AA seq
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MDILDTIIKESKGGGILRSPLSKNSSRVHFEAPSNLKDILSKYSNSEECLEEIQGLMTHA
QNLQGAALITWIEELQESIPLLNKKLEGFVKALFKISWVTQEAPVADAFKVFLINLLSAH
SFYITDIVQSLVSNFLIKNDQISHNTHEVLKVVILTCPLDGKRALLQSLSDNIPYIMTPA
CDTHTSYFDNLLKLLRYAKDIRLDILRLIIQRAVELDVRLPKISLEEENEKEEELNGETQ
FDFDDSVSTFLIRVHPHLKNPIIKARNNMEQLMTLLLNFVEEESKGEEAKQLYLDFLSLF
DSYILSTWATEHVQFVLFYLVSKDPLYALNFLSWLWKKFQNPSTHSIERQSAIAYIVSLI
ARGKFIPLNTAKCYLEKIVSWIHLYIKNSEYANKDFMYADIKTHGPFYAAVQSALYMFAF
RHEEFMDNKKNLEFLKSLNFNTIVTCSLNPLRVCLPPVVKNFASISRNYQLAYCDTIIQR
NNRINLPIVGSLSESSSSAKPLLLDSFFPFDPYSLKDSDSFISPLYRKYSSSSNAESVSD
SEEEEEEEVEGMEIGSLKEVPSFHYGTSPGFKMI
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggatattttagatacaatcataaaggaatccaaaggagggggcatcctccgctctcct
ctatccaaaaactcctctcgtgttcattttgaggccccatctaaccttaaagacatcctt
tccaaatattctaacagtgaagaatgtcttgaagaaatccaaggtcttatgacacacgct
caaaatcttcaaggagcagctctcattacatggattgaggaacttcaagaaagtattccc
cttcttaataagaagttggagggctttgtgaaagccctattcaagatatcatgggtgact
caagaggcccctgtggcagatgcatttaaggtttttctcattaatttattgagtgcgcat
agcttttacataacggacattgtccagtctcttgtctctaatttccttataaaaaatgat
caaatcagtcataacacgcacgaagttttgaaagtcgttatattaacttgtccattggat
ggaaagagagcgcttctacaaagtctgagtgataacatcccgtatattatgactcctgcg
tgtgatacacatacttcatactttgataatttactcaaactacttcgatatgccaaagat
attcgtcttgatattctacgtcttattatccaaagagcagtagagttggacgttcgtttg
cctaaaatctccttggaggaggaaaatgaaaaggaagaagaactaaatggggagactcaa
ttcgattttgatgattccgtctccacttttttaatcagagtgcatcctcatctcaaaaat
cctattattaaagctagaaataatatggaacagttaatgaccctattacttaactttgtg
gaagaggagtccaagggagaggaggcaaagcagctctatctggactttttgagcctattc
gactcttatattctttctacgtgggctacagagcatgttcagtttgttctattttatctc
gtgagcaaggatcctctctatgccctcaattttctaagttggctctggaaaaaattccag
aaccccagtactcatagcatagagcgacaatctgcaatagcgtacattgtcagtctcatt
gcccgagggaaattcattcctctcaacactgcgaaatgttaccttgagaaaattgtgtct
tggatacatttgtatatcaaaaacagcgaatatgccaataaggactttatgtatgcggat
attaagacacatgggcccttctatgctgcagttcaatccgcattatacatgtttgcattt
cgacatgaagaattcatggataataaaaagaatttagaatttctgaagagtcttaacttt
aacaccatcgttacctgctccttgaatcctcttagggtctgccttcctccagtggtcaaa
aattttgcaagtatttctagaaactatcagctagcctattgtgataccatcattcaaagg
aataatcgtattaatttacccattgttggaagtctaagtgagagcagttcgagtgctaag
cctcttctgttagattcatttttcccctttgatccttactcgctaaaagactcggactca
tttatcagtccactctaccggaagtattcctctagtagcaatgctgaatcggttagtgat
tctgaggaagaagaagaggaggaagtagaagggatggagattggtagcttgaaggaggtt
ccctccttccattatggtacatctccaggatttaaaatgatatga
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