Lepeophtheirus salmonis (salmon louse): 121116332
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Entry
121116332 CDS
T08214
Symbol
Chd1
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121116332 (Chd1)
03036 Chromosome and associated proteins [BR:
lsm03036
]
121116332 (Chd1)
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
121116332 (Chd1)
Chromosome and associated proteins [BR:
lsm03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
121116332 (Chd1)
SLIK complex
121116332 (Chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Chromo
ResIII
HDA2-3
DEAD
SWI2_SNF2
CHDCT2
MpPF26
Motif
Other DBs
NCBI-GeneID:
121116332
NCBI-ProteinID:
XP_071743619
LinkDB
All DBs
Position
4:complement(1782107..1789339)
Genome browser
AA seq
1617 aa
AA seq
DB search
MKKHENGTRSSEDNEHSDSESSSSSSSDSGSSHSSGGGLSSSDANSSPKKKSTKSQNENN
IPDWDQNPDLYGIRRSSRSRKEPERLNDDSEEESDDNSSHEYSKPLKKNENSVWNENSSY
TESDDNSSYIPKSKPIFKKNKKSKGRSAKKNLKKSVVGRRRKGMSSESEEHHDEEDYRRF
SRRRKPDSEKPVSYVIPDSDEDIDGDDDQVASWTYEEDTTTNAEGVNENIPTIEKVIDHR
KGFVGGTGAGTTIYNIKAKGEPLVSEESEMQYLINWKELSHLHNTWESETSLDELGAKGM
KKLHNYMSRMSDYESWKKNANPEDIEYNECQLEMSQQLVSSYTIPERIIAERSVDDQVEY
YVKWKNLPYIDATWEAGHLIDNEFQSVIENFRFRQESRYAPSSKSKFFKYRPKFTTTKSQ
PDYMGGSDDSLKLRDYQLDGINWLVHAWCKQNSVILADEMGLGKTIQTVNFLYYLFHTHQ
LYGPFLVVVPLSTLDAWQREFARWAPDINVLSYVGDVASRSIIREYEWTHPGNKRSKFNA
ILTTYEIVLKDKQFLINVPYAVIMVDEAHRLKNDDSMLYKCLQDLTVYQRLLITGTPLQN
SLKELWSLLHFIMPDKFDRWDEFNEQFGTSSAEKRGYTKLHKLLEPYILRRVKKDVEKSL
PAKVERILRVDMSRKQKQFYKWILTRNYAALTKGIKGSTVSFVNIVMELKKCCNHILLTR
PEEIDNTFTMSREEKLQFLLRGSGKLLLLDKLLVRLRETGHRVLIFSQMVRVLDILAEYL
ELRRFSFQRLDGGIKGELRKQALEHFNNPGSTDFCFLLSTRAGGLGINLATADTVIIFDS
DWNPQNDLQAQARAHRIGQKDQVNVYRLVTMNSVEEDIIERAKKKMILDHLVIQRMDTTG
TTILNKPKSAEKNSTPFSKEELGAILKFGAEDLFKDEDDGEEEPKCDIDEILNRAETREE
ETSMSTGEEILSAFKVASFAVDEDEPITIEKSSESTKPDKEWSDIIPQDTRDRIEEEERQ
KEIEGLCLGPRNRKTVGEDNASKRKRSSDEECDSDDSGKPSKKRGRPSGKEKITGFSDTE
IRRFIKSYKKFPKPQERLEAIATDSELQEKAMKDLIKLGNALYDRCLEAVQEVVLEGETT
ASKSKAISVKIGNVAVNAKTLCDAVNLLSPLADFLPALSCENDRSSWSKIKNLPFKYKDP
GYDDIEWGISDDVNLLKGVYIHGYGSWDSIKMDRDLELRDKIMSNADRKPQAKHLDSRVA
FLLRSLKKSLEGGAEKSSVVPKKSRTSRPKKTPAVLAQNENSNDSKSESHSHTEAKYKSV
DIIENTDSSNDEDEKIEKKETKKENIDDRNREKKSKKKKDKPILHITAKSEPIIIGELAP
EVFSKCKEMMRAVKKSLKSLDRPDQSLGESEKAHHNRHCLLHIGRHIDSLLVKMNSEEKS
RSWKSHLWCFVSKFTEHDAKKLYKLYRHALKKKHREKSEDPVKRTSVVDNDRKPSSSSYR
PSYHHNKTPNASFAPSFRRDDTAKKPYHNNHNSAEQFNKYPRKSNYDSGGHHRSNNHHLS
GHNRDGYSHHHHDMYNKPHQHHHNHWTGGGGHNGSSYGNQPPPHRKHEWRGPPPEYR
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagcacgaaaatggaactagatcatctgaagataatgaacactctgattcagag
tcatcatcatcatcttcttccgattctggttcttcacattcatcaggaggaggactttct
tcctcagatgcaaattcctcaccaaaaaaaaagtcaacgaaatctcaaaatgaaaacaac
attcctgattgggatcaaaatccagatttgtatggtattcgtcgctcaagtaggagtcgt
aaagagcctgagagactcaatgatgactctgaagaggaatctgatgataattcttctcat
gagtactctaaaccacttaaaaagaacgaaaatagtgtgtggaatgaaaactcatcttat
actgaatcggacgataattcatcgtatatacctaagtcaaaacctattttcaaaaaaaac
aaaaaatctaaaggtagatctgctaaaaagaatttaaaaaaatcagttgtgggtagacga
cgcaaaggaatgtctagtgaatctgaggaacatcatgacgaagaggactatcgacggttc
tctcgtcgaagaaaaccagattctgaaaagccagtatcatatgtcattccggattcagat
gaagatatcgatggtgatgatgatcaggttgcttcatggacttatgaggaagataccacc
acaaatgccgagggagtcaatgaaaatattccaacaattgaaaaagttattgatcatcgt
aaaggctttgttggaggtactggtgcaggtacaaccatttataatattaaagccaaaggc
gaacctcttgtctcagaagaatctgaaatgcagtacctgataaattggaaggaattgtct
caccttcataatacatgggagtcagaaacatcactcgatgaacttggggctaaaggaatg
aaaaaattacataattatatgagtcgtatgtctgactatgaatcatggaaaaagaatgca
aatcctgaagacatagaatacaacgaatgtcaattagaaatgtcccagcaactagtttca
agctataccattcctgaacgaattattgctgaaagatccgtggatgatcaagtcgagtat
tatgtcaaatggaaaaatctcccgtatattgatgcaacatgggaggctggacatttgatt
gacaatgagtttcaatctgtgatcgaaaattttcgatttcgacaagagtctcgctatgct
ccctcttctaagtctaaatttttcaaatatagacccaaatttacgactacaaaaagtcaa
cctgattatatgggaggttcagatgattctttgaaactcagagattatcaattagatggt
attaactggttggttcatgcctggtgcaagcaaaattctgtaattctagccgatgaaatg
ggactggggaaaaccattcaaacggttaatttcttatattacttatttcatactcatcaa
ctttatggtccgtttttagtggttgtgcctctctctacgctagacgcttggcagcgagaa
tttgccagatgggcacctgatataaatgtcttatcctatgtcggtgatgtcgcttctcga
tctataattcgtgaatacgaatggacgcatccagggaataaacgttcaaagttcaatgca
attttgactacttatgaaatagtcttaaaagataagcaatttttgataaatgtgccttat
gctgtgataatggtggatgaagctcatcgtcttaaaaatgacgattccatgctttacaaa
tgcctacaagatcttacagtttatcaacgccttctcatcactggaactcctttacagaac
tctttaaaggagctttggtctcttttgcattttattatgcctgataaatttgatagatgg
gacgaatttaacgagcaatttggaacatcttcagcagagaaaagaggatataccaagctt
cataaactcttagagccctatattcttagaagagtgaaaaaggatgttgaaaagtcacta
cctgctaaagtcgaaagaattttaagagtagatatgtcacgaaaacaaaaacaattttat
aagtggatactaactcggaattatgctgctttaactaaggggataaagggatcaacagtc
agttttgttaatattgttatggagttaaaaaaatgttgcaatcatattttacttactcgt
ccagaagaaatagacaatacgttcacaatgagcagagaagaaaagttgcaatttctgctc
cgaggctctggaaaattattactattagataaactacttgttaggcttagagaaacaggt
catcgcgttctaattttttctcaaatggttcgagtcttagatattctagcagaatatctc
gaattgcgtcggttttcatttcaaaggcttgatggaggaatcaaaggggagcttcgaaaa
caggcacttgagcactttaataatccaggatcaacagatttctgttttttactttcaact
cgagctggtggcttaggcattaaccttgcaacagcagatactgtcattatatttgattcg
gattggaatcctcaaaatgatcttcaagctcaagctcgtgctcatcgtattggtcaaaaa
gatcaggtaaatgtttatcggctcgttactatgaactctgttgaagaagatataattgaa
agagctaagaaaaaaatgatattagatcatttggtaattcagagaatggacaccactgga
actacaatcttgaataaacccaaatctgctgaaaaaaattctactccatttagtaaagaa
gagcttggtgcaatattaaaatttggagctgaggatttgttcaaagatgaggatgatgga
gaagaagagcccaaatgtgatattgatgaaatacttaatcgagctgaaacacgagaagaa
gaaactagtatgtcaactggtgaggaaattttgtctgcattcaaagtcgcatcatttgct
gttgatgaagatgaacctattaccattgaaaaatcgtcagagtctaccaaacctgataag
gaatggtctgatattatacctcaagacacgagggatcgtatagaagaagaagaaagacaa
aaggaaattgaaggcctctgcttgggaccaagaaatcgaaaaactgttggtgaagacaat
gcttctaagcgaaaaagatcttctgatgaagaatgtgattcggatgattcgggtaagcct
tctaagaaacggggtagaccctcaggaaaagagaaaattactggattttctgatactgaa
attcgtagattcattaagtcttataaaaagttccctaagccacaagaaaggttagaagcg
attgccacagattcagaacttcaagaaaaagctatgaaggatttaatcaagctgggtaat
gcactttatgaccgttgcctagaggctgttcaagaagttgttctggaaggcgaaactact
gcttccaagtctaaagcaatttctgtcaaaattgggaacgtcgctgtaaatgctaaaact
ttatgcgacgcagtgaaccttcttagtcctcttgctgattttttgcctgcgcttagttgt
gaaaatgatcgtagttcatggagtaagataaaaaatcttccattcaaatacaaagatcct
ggttacgatgatatcgaatggggaattagtgatgatgttaatctgttaaaaggtgtatac
attcacggatacggttcttgggactctattaaaatggatagagacttagaacttagggat
aaaataatgtcaaatgctgatcgtaaacctcaagcaaagcatttagattctcgagttgca
tttctattgagatctctgaagaaaagtttagaaggaggtgcagaaaaaagttcagtagtt
cctaaaaaaagtcggacctctcggccaaagaaaactcccgctgtactggctcaaaacgaa
aactcaaacgatagtaagagtgaatctcattctcacacagaagcaaagtacaagtcagtt
gatattattgaaaacacagattcatctaatgatgaagatgagaaaattgaaaagaaagaa
acaaagaaggaaaatattgatgatcgaaatcgagaaaagaaatcaaagaagaaaaaagat
aaaccgatccttcatatcactgctaaaagtgagcctattattattggagagctcgcgcct
gaagttttctcaaagtgtaaagagatgatgagagctgtgaaaaagtcgttaaagtcgtta
gatcgtccggatcaaagccttggagaatcagaaaaagcgcatcataatcggcattgttta
ttgcacattggcagacatattgattctcttctagttaaaatgaattcagaggaaaaatca
cgaagttggaaaagtcatttgtggtgttttgtctctaaatttactgaacacgatgcaaaa
aaattgtacaaactatatcgtcatgcattaaaaaagaaacatagagaaaagtcggaagat
ccagtgaagcgaactagcgttgtggacaatgatagaaaaccttcatcgtcttcatatcgt
ccatcctatcaccataataaaacaccaaacgcctcatttgccccttcatttcgaagagat
gatacagccaagaaaccttatcataataatcacaattctgccgagcaatttaacaaatac
ccacgcaaaagtaactacgatagtggcggacatcatcgatctaacaaccatcacttaagc
ggccataaccgtgatgggtatagtcatcatcaccatgatatgtacaacaagcctcaccag
catcatcataatcactggacgggagggggtgggcataacgggtcttcttatggaaatcaa
cctccacctcatcggaaacacgaatggagagggcctccgccggaatatagatga
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