Lepeophtheirus salmonis (salmon louse): 121116348
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Entry
121116348 CDS
T08214
Symbol
Chc
Name
(RefSeq) LOW QUALITY PROTEIN: clathrin heavy chain 1
KO
K04646
clathrin heavy chain
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm04142
Lysosome
lsm04144
Endocytosis
lsm05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121116348 (Chc)
04142 Lysosome
121116348 (Chc)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
121116348 (Chc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsm04131
]
121116348 (Chc)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsm04147
]
121116348 (Chc)
Membrane trafficking [BR:
lsm04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
121116348 (Chc)
Exosome [BR:
lsm04147
]
Exosomal proteins
Proteins found in most exosomes
121116348 (Chc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
TPR_1
Motif
Other DBs
NCBI-GeneID:
121116348
NCBI-ProteinID:
XP_040566519
UniProt:
A0A0K2UB11
LinkDB
All DBs
Position
4:2005758..2012777
Genome browser
AA seq
1687 aa
AA seq
DB search
MSSSGASNALLPIKFQEHLQLTNVGINSSNVTFASLTMESDKYICVREKVGDTNQVVIID
MADPSNPTRRPITADSAIMNPASKVIALKAQKTLQIFNIEMKSKMKAHIMQDDVVFWKWI
NLNTIALVTETTVYHWSVEGDSQPQKVFDRLSSLQGCQIINYRTDAAQNWLLLIGITAQM
NRVVGNMQLYSEERKVSQPIEGHAASFIQFRMEGNPADSTLFCFAVRGAQGGKLHIIEVG
NSPSGNQSFQKKAVDVFFPPEALNDFPVAMQVSEKHGVVYLITKYGYVHLYDIESGNCIY
MNRISAETIFVTAPHEPTNGIIGVNRKGQVLSVSVDEDNIINYISTNLNNPEMALRFAVR
NNLGGADDLLIKKFNTLFSNGQYSEAAKIAANAPKGSLRTPQTIAKFQQVQSQPGQTSPL
LQYFGILLDQGQLNKYESLELCRPVIQQNRKQLLEKWLKEDKLQCSEELGDLVKATDPTL
ALSVYLRANVPNKVTMCFAETGQYQKIVLYAKKVGYTPDYIFILRNIMRTNPDSGAQFAQ
MLVVDDEPLAEISQVVDVFMEKNMVQQCTAFLLEALKNNRPSEGPLQTRLLEMNLMAAPQ
VADAIMGNQMFTYYDKAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNADWLVNF
FGSLGVDDSLECLKSMLQVNLRQNLQVCVQIATKYHEQLTTNSLIDLFENFKSYEGLFYF
LGSIVNFSQDPEVHFKYIEAACKTGQIKEVERICRESNCYNPERVKNFLKEAKLSDQLPL
IIVCDRFDFVHDLVLYLYRSNLQKYIEIYVQKVNPSRLPVVVGGLMDVDCSEDIIKNLIA
VVKGQFNTDELVEEVEKRNRLKLILPWLETRVHEGSEEPATHNALAKIYIDSNNNPERFL
KENSHYDSSVVGRYCEKRDPHLACVAYERGKCDRELISVCNENSLFKSEARYLVRRRDTD
LWAEVLNDENVHRRPLIDQVVQTALAETIDPEDISVTVKAFMAADLPNELIELLEKIVID
SSTFSDHRNLQNLLILTAIKADTKKVMEYIDKLDNYDAPDIANIAIQNQLYEEAFAIFKK
FDVNSSAVQVLIEKVGNLDRAYEFAERCNEPAVWSQLGKAQLKQDMVKEAIDSFIKANDP
TDYLDVVETTTRTNNWEDLVRYLQMARKKARDTYIESELIYAYAKTNRLADLEDFITSPN
HADFLKIGDRCFDGKMYEAAKLFYKNVSNFAKLAITLVYLKDYQGSVESARKANCTRTWK
EVCFACVENNEFRLAQMCGIHIVVHADELEDLINYYQDKGYFEELMALLEASLGLERAHM
GMFTELAILYSKYKPSKLREHLEHFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA
VLSMMAHPTEAWKESHFKDIITKVANIELYYKAIQFYLDYKPMMLNDLLLVLAPRMDHTR
AVAFFTKVNHLQLVKPYLRSVQNLNNKAVNEALNGLLIDEEDFNILKTSIDAFDNFDNIS
LAQTLEKHELIEFRRIAAYLYKGNNRWKQSVELCKTDSLFKDAMEYAADSKNAEVAEELL
SYFLDKKAYDCFAACLFQCYDLLHPDVILELAWRHNIMDFAMPYLIQVMREYTSKVEKLV
ESEVTRMEEKQEQEYKPVVMDNQSQLMLTGPMNFNNQGANPGAVSANFSGNSFVPPGGIP
SYQGYSM
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcctctggagcgagcaatgccctgctccccatcaaattccaggagcatcttcag
ttgacgaatgtgggcattaactctagcaatgtgacgttcgcgtccctcacgatggagtct
gacaagtacatctgcgtgagggaaaaggtgggggacacgaatcaagtggtgataatcgac
atggcggatccctccaatcccacgcggcgccccatcactgcagattccgccataatgaat
cctgcttccaaagtgatagcgctcaaggctcagaagacgcttcaaatctttaacatcgag
atgaagtctaagatgaaggcgcacataatgcaggatgacgtcgtgttttggaagtggatc
aacctcaacacgatcgctctggtgacggagacgacggtgtaccattggagcgtggaagga
gactcgcagccccaaaaggtctttgaccgcctttcttctctccaaggctgtcaaatcatc
aactaccgaacggatgcagctcagaattggcttcttctcattggcataaccgcacagatg
aatcgtgttgtggggaatatgcaactctattcagaagaaagaaaagtgagccagcccatt
gagggccacgctgcgtccttcattcagttcagaatggaagggaatccagcggattccact
ttgttctgttttgctgtacgtggagcacaggggggaaagttgcacatcatcgaagttgga
aactcaccttccggaaatcaatcctttcaaaaaaaagccgtcgatgtttttttccctcca
gaggctctgaatgatttcccagttgctatgcaggttagtgaaaaacacggggtggtttat
ttaatcaccaaatatggctatgtgcatctctatgatattgaaagtggaaactgtatttac
atgaatcgaattagtgctgaaaccatttttgtaactgctcctcatgaacctaccaatggt
ataatcggcgttaataggaaaggacaggttctctctgtttcagtggatgaagataacatc
atcaattatatttctactaatctaaataatccagaaatggcactcagattcgctgtaaga
aataatttaggtggagcggacgacctacttataaagaaatttaacacacttttttccaat
ggacaatactcagaagcagctaagattgctgcgaatgcacccaaaggaagtttgagaact
ccacaaactatagcaaaatttcaacaagttcaatctcaacctggtcaaacctctcctctt
cttcaatattttggaattcttttagatcaaggacaacttaataaatatgagtccttggag
ttatgtaggccagttattcaacaaaaccggaagcagttactcgaaaaatggcttaaagag
gataaacttcaatgttctgaagaattgggtgacttagtcaaagctactgatccgactctt
gctctctccgtttatttacgtgctaatgtaccaaataaagtaaccatgtgtttcgcagag
acagggcaataccaaaaaatagtactttatgccaaaaaagtcggttatacaccagattat
atttttattcttcgtaatattatgcgcaccaatcctgattctggagctcagtttgcgcag
atgcttgtagttgatgatgaaccactagctgaaattagccaagtcgttgatgttttcatg
gagaaaaacatggttcagcaatgtaccgcttttcttttggaagcgttaaaaaacaatcga
ccttctgaaggacctcttcaaactaggttattagaaatgaatttaatggctgctcctcaa
gtagccgacgccattatgggtaatcaaatgtttacttattatgacaaagctcacatcgca
cagttatgtgaaaaggccggtcttttgcaacgagctttggagcattataccgacttgtat
gatatcaaaagagctgtagtgcacactcatcttctaaatgctgattggttggttaatttt
tttggatcccttggtgttgatgatagtttggaatgtcttaaaagtatgcttcaagtaaat
ttgaggcaaaatcttcaagtttgtgttcaaatagccacaaaataccacgagcagctgaca
actaattctcttattgatctatttgaaaactttaaaagttatgaaggtctgttttatttc
ctcggaagtatagttaatttcagtcaagatcctgaggttcactttaaatatattgaagct
gcttgtaaaactggtcaaattaaagaagttgaacgtatttgtagggaaagtaactgctac
aatcctgaaagagtgaaaaatttccttaaagaagcaaagttgtctgatcaacttcccctt
attatagtctgcgatagatttgattttgttcatgaccttgttctttatttgtatcgaagc
aatttgcagaagtacatagagatttatgtacaaaaggttaatccatccagacttccagtt
gttgttggaggtcttatggatgtcgattgttcagaagacatcatcaagaatcttattgca
gttgtcaaaggacagtttaacactgatgaactcgttgaagaggtggaaaagcgtaatcgt
ttgaaactaattttgccttggcttgagactagagtacatgaaggatctgaggagccagcc
acccataatgctcttgcgaaaatttacattgattccaacaataatcctgagcgatttttg
aaggaaaattctcactacgatagttctgttgttggacgttactgtgaaaaaagagatcct
catttggcttgtgtagcttatgagagagggaaatgtgatagagaactgatttccgtatgt
aatgaaaattcactcttcaaatcagaggctcgctacttggttcgaaggagagatacagat
ctttgggctgaagtattaaatgatgagaatgttcatagacgtccacttattgatcaagtt
gttcaaactgccttagctgaaactattgatcctgaagatatatctgttactgtgaaagca
tttatggcagcagatttaccaaatgaattaattgaattattggagaagatagtcattgat
agctcgactttcagtgatcacagaaatttgcaaaatcttttgattttgacggcaatcaaa
gcagatacaaaaaaagtcatggaatacattgataagttagacaattatgatgccccagat
attgcgaatatagcaattcaaaatcaattatatgaagaagcttttgctatattcaagaaa
ttcgacgtcaactcatctgctgttcaagttctaattgagaaagttgggaatttagataga
gcctatgaatttgctgaaagatgcaatgaacctgctgtttggagtcaattaggcaaagcg
cagctaaagcaggacatggtgaaagaggctattgactctttcattaaagcaaacgaccct
actgactacttggatgtagtagagacaactacaagaacaaataattgggaagatttagta
cgatatctacaaatggcaagaaagaaagcaagagacacttacatagaatcagaacttatc
tatgcatatgctaaaacgaacagactggcagatttggaagattttattacttcacctaat
cacgctgattttttgaaaataggagatcggtgtttcgatggaaaaatgtatgaagcagct
aaactattttacaaaaatgtttccaattttgccaaactggctatcactttggtttatctg
aaagattatcaaggatctgtagaaagtgcaagaaaagctaattgtacaagaacatggaag
gaggtttgtttcgcatgtgtggaaaataacgaatttaggttggctcaaatgtgcggtata
cacatagtcgttcatgctgatgagttggaggatctcatcaattattaccaagataaaggc
tatttcgaagaattaatggctctcctagaagcttcacttggattagagagagctcatatg
ggtatgttcacggagcttgctatcttgtattctaaatataagccttccaaactgagagaa
catctagaacatttttggtctcgggtcaacattccaaaggtacttcgtgccgcagagcaa
gctcacttatgggcagagcttgttttcctatatgataaatacgaagaatatgataatgct
gtcttgtctatgatggctcatcccacggaagcctggaaagagtcccattttaaggatatc
atcacgaaagttgctaatattgaactgtattataaggctattcagttttatctcgactat
aaacctatgatgttaaatgatttgcttcttgtgcttgctcctcgaatggatcatacccgt
gccgtcgcattttttactaaagtcaatcatttgcagcttgtgaagccttatttgcgctcg
gttcaaaatttaaacaacaaagctgtaaatgaagcattgaatggattactcatagacgaa
gaagactttaatattttaaaaacatctatcgacgcttttgataactttgataatatttca
ttagctcaaacactagaaaaacatgagttaattgaattccgacgcattgccgcatattta
tacaaaggaaataatagatggaaacagagtgttgagctttgtaaaacagatagtcttttc
aaagatgctatggaatacgcagccgatagcaaaaatgctgaggtcgcagaagagctactg
tcttacttcctagacaagaaggcttatgactgttttgcagcttgcttgtttcaatgctac
gaccttcttcatcccgacgttatcctagaactcgcctggaggcataatataatggatttt
gcaatgccttatctcattcaagtcatgcgagagtatacgtcaaaggttgaaaaactcgta
gagtctgaagtgactcgaatggaggagaaacaagagcaagagtataaacctgttgtcatg
gataatcaatcgcagttgatgttgaccggtcctatgaattttaataatcaaggagcaaat
cctggtgctgtaagtgcaaattttagtgggaattctttcgtgcctcctggtggaatcccc
tcatatcaaggctacagcatgtaa
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integrated database retrieval system
