Lepeophtheirus salmonis (salmon louse): 121116421
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Entry
121116421 CDS
T08214
Symbol
Vps35
Name
(RefSeq) vacuolar protein sorting-associated protein 35 isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121116421 (Vps35)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsm04131
]
121116421 (Vps35)
Membrane trafficking [BR:
lsm04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
121116421 (Vps35)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
121116421
NCBI-ProteinID:
XP_040566607
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Position
4:4464182..4467967
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AA seq
782 aa
AA seq
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MRIEYEGQEKLLEDTLTAVKQGSFQMKRCLDKNKLMDGLKFASEILGKLRTSALSPKSYY
QLYMGICDEVRHLESFLLEEFRRDRKVEDLYELVQYAGQIVPRMYLLITVGLVYIQTKEY
PKKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDCIEEEEEGEGTVEDSIDFIQL
NFAEMNKLWVRMHYQGHSRDRDRKEKERMELRILVGTNLVRLSQLESVDVDMYRKIVLPG
ILEQVVSCREPIAQEYLMECIIQVFPDEMHLATLVPFLNACGQLHEKVNVKNVIISLIDR
LALYATREESGWVPGDVQLFDIFSHEVASIISGRGDSIPPEDIVSLQVSLSNMAYKCYSD
RVDYVDTVLSVTKKLFDNIQLERVEFDTPVGCELEKLLKIPIINYNDIITVSKLEHFLPL
LATFDFEGRRAMANFITNNIIDNETTIPTADQVEIILSMCSPLIVTQDEGPSPDNWPDPE
EFVEEQGLMGRLVHMFVSSDLDQFFQILNVSKKHLGAGGPKRIGSTLPSIIVQSYRLAQM
YYDARKKDDKWEKKVDKVLQFSHNTISALVKADMAELPLRLYLQGAAVMDKIVWENQETL
AYEFMSQAFSIYEDEISESRAQLTAISLIIGTLEQMTCFTEENHDPLRTQCALAASKLLK
KPDQCRGVQVCSHLFWSGKTKSNDGKELQDGKRVLDCLKKGVKIASQCIDSASRVQLFIE
LLNKYVYFFEKGNKLITKDMIQELIAKIKEEISALEMDEELDQLNQHFDNSLAHFNILFD
DV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgcggatcgagtacgaggggcaggagaagctcttggaggataccttgaccgccgtgaag
caaggatccttccaaatgaagcgatgtctggacaaaaacaagcttatggatggcctcaaa
tttgcctcagagattttgggcaagcttcggacctcggccctgagtcccaaaagctactat
caactctacatgggcatctgtgatgaagttcgacacttggagtcctttcttctagaagag
tttcgtagagatcgtaaagtggaggacctctacgaattggtgcaatacgcaggccaaatt
gtgcctcgaatgtatttgctcatcaccgtgggactcgtctacattcaaacaaaggaatat
cccaaaaaagacatcctcaaggatctcgtagaaatgtgccgaggagttcaacatcctctt
cgtggtctttttctccgtaattatcttctacaatgtactcgaaacatccttcctgactgc
attgaagaagaagaagaaggcgaaggaaccgtggaagactccattgactttattcagctc
aattttgctgaaatgaataaactctgggttcgcatgcattaccagggtcattcccgtgat
agagatagaaaagaaaaggaacggatggagttacggatccttgtgggtactaatcttgtt
cgcctgtcacaacttgaaagtgtggatgttgacatgtacaggaagattgttctacctggt
atactagagcaagttgtttcatgtcgtgaacccattgctcaggaatatctcatggagtgt
atcattcaagtattccccgatgaaatgcatttagcgactcttgttccctttcttaatgcc
tgtggacagttgcatgagaaagttaatgttaagaacgtcatcatatcccttattgatcga
ttggctctttatgctactcgagaagagtctggatgggttcctggagatgttcaacttttt
gatatttttagtcacgaagtcgcttccataatatcaggacggggcgatagtattcctcct
gaagatattgtatccctacaagtgtctttatcgaacatggcttacaaatgttattctgat
cgagtcgattatgttgatactgtactctccgttactaaaaaactttttgacaatattcaa
ttagaaagagttgagtttgatacgcctgtaggatgtgaacttgaaaagcttcttaaaatt
ccaatcattaattataatgatatcataaccgtatccaaattagaacatttcctaccactt
ttagccacatttgatttcgaaggtcgtagagccatggctaattttattactaataacata
attgataatgaaactacaatacctactgctgatcaagttgaaatcatcctttccatgtgc
tctccactcatagtaactcaagatgaagggccaagtccagataattggcctgacccggaa
gagttcgttgaagagcaaggactcatgggcaggcttgttcatatgtttgttagctctgac
ttagaccagtttttccaaattttaaatgtatcgaagaagcatcttggtgctggaggtcct
aaaagaattggttctacacttccatctatcatagttcaatcctatcgattggcccaaatg
tactatgatgctagaaaaaaggacgacaaatgggaaaagaaagttgataaagtactacaa
tttagtcataataccatttcagctctcgttaaagcagatatggctgagcttcctttacgc
ctctatctacaaggtgctgcagtcatggataaaatagtatgggaaaatcaggaaactctc
gcgtatgaatttatgtctcaggccttttccatttatgaagatgaaattagtgagtctaga
gcccaattaacagcaattagtttgataattggaactttagagcaaatgacttgctttact
gaagaaaatcatgatccgttaagaactcaatgtgctttagccgcttcaaagttacttaaa
aaaccagatcaatgtcgtggtgtccaagtgtgttctcatttgttttggtccgggaaaact
aagagcaatgacgggaaggaacttcaagatggaaagcgtgttttagattgcttaaaaaaa
ggagtcaaaatagcatctcaatgcattgactctgcatctcgcgttcagctctttattgaa
ctcttaaacaaatacgtttactttttcgaaaagggaaataagttaataactaaggatatg
attcaagaattgatagctaaaatcaaggaagaaatatctgcacttgaaatggatgaagaa
ttggatcagcttaaccagcattttgataattctttagctcattttaacattttatttgat
gatgtttga
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