Lepeophtheirus salmonis (salmon louse): 121116422
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Entry
121116422 CDS
T08214
Symbol
Spt5
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121116422 (Spt5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121116422 (Spt5)
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121116422 (Spt5)
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
121116422 (Spt5)
RNA polymerase I system
121116422 (Spt5)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
121116422 (Spt5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
KOW
KOW5_SPT5
KOW7_SPT5
KOW2_Spt5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
SH3_KIN17_C
GPKOW_C
DUF1543
DUF3912
DUF1216
Motif
Other DBs
NCBI-GeneID:
121116422
NCBI-ProteinID:
XP_040566608
LinkDB
All DBs
Position
4:4470534..4475868
Genome browser
AA seq
1087 aa
AA seq
DB search
MSDSEGSGSDASESSPARSRGRSSGRRRRRRDESDEDEEDEEEYDSEEEEEYEAKPKKKK
KKSDFIIDEAEVDDDVEDDEEGYDDYDATDLNNEAEEAGQTAREIDARMRAAQRDHLGFG
RGGSGDEDGLDEEEIERYYNSRYNEEQEVLDIYGDAHEKHMSEEITQQTMLPGVKDPNLW
MVKCVIGMEKETVLRVMNKYFAHAQDEATKLQIRSVVAHEHVKGYIYIEAFKQSHVKELI
DGIGSLRLGSYSQKMVPIKEMTDVLRVMKKPSGILKPKQWVRLKRGIHKDDLAQVDYVDT
SQNSVHLKLLPRIDYTRLRGALRTPSDESKKIKKKSPPAKLFDPEKIRSIGGEISHDGDF
LMFEGNRYSRKGYLYKDFAMNAIISEGVKPTLAELEKFEETPEGLDIELSSADKDDVVHS
FSNGDNVEVMEGELVNLQGKVIAIDGGKVTILPKHDDLKEPIEFQASELRKFFSLGNRVR
VIGGRYEGDTGLIVRVQENLIVLFSDLTMHELKVLPRDLQLCTDMATGVDSLGQFQFGDM
VQIDSSTVGVIVQIQKENFQVLNMMGKVVSVKPQALQKKRENRNAVAIDSEQNQIIKKDV
VKVIDGPHNGLQGEIRHLFRSFAFLHSRKMIDNGGIFVCKCRHLVIAGGKNTNQNRVGGS
AMPGFMSPRLSSPMHPSQSGRGAGGGGAGRGRGRGRGVIGRDRELIGKTIKITQGPYKSH
IGIVKDATESTARVELHAKCQTISVDRGRIEVIGTPSQNVGSVSTYTRTPSYGSGSGTPM
YAPGSRTPMYGSQTPMYDGSRTPHYGSTTPSHEDGSRTPGRSGSGAWDPSVTNTPAPIRE
YDFDGQSGRSGGESSSGAFDDSPSPNYNPGTPGYAQESPSAPYTPATPGSVYNPGEGYSP
YQASPSPAGYQSTPSPSSYVPTPSPGQNYQPSPSPGYAAPSPGLGYSPMTPGSSHHTPSP
YAATPGQATQSELESTDWYSPDIEVLICDTHDDTRLVGQIGVVRGVTPGMCSVYLPDEYR
TVSIAADHLQPVKPVRGDKVKVIMGEDRDATGSLLSIDSQEGVVKLEIAGDVKMLQLKYL
CKMKSDD
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatagcgaagggagtggctcggatgcgagcgaaagtagccctgcgaggagtcgt
ggacggagtagcggacgtcgtcgtcgtcgtcgtgacgagtctgatgaggatgaggaggac
gaggaagaatacgactctgaagaggaggaagagtatgaggcgaagcccaagaagaagaag
aagaagagtgacttcatcattgacgaggctgaagtggatgacgacgtggaggacgatgaa
gaaggatacgacgactacgacgccacggatctgaacaatgaggcagaagaagcgggtcaa
acagcccgagagattgatgctcggatgcgtgcggctcaaagggaccatctggggtttgga
agaggcggctccggggatgaggatgggttagacgaagaagaaatcgagcgctactacaat
tcccgctacaatgaagagcaggaagtgctggatatctatggagatgcacatgagaagcac
atgtccgaggagatcactcagcagacaatgctccctggagtcaaggatcccaatctctgg
atggtcaaatgtgttatcggcatggagaaagagactgtgcttcgggtcatgaacaaatac
tttgctcatgcacaagatgaagcaaccaagcttcaaattagatccgttgtggctcatgaa
cacgtcaaaggctatatttacattgaagccttcaagcaatctcatgtcaaggaactgatc
gatggtatagggtccctccgtctgggctcttattcacaaaaaatggttcctattaaagaa
atgacggacgtacttcgtgtgatgaaaaagccttccggtattttaaaaccaaagcaatgg
gttcgtcttaaaagaggaattcataaggatgatcttgctcaggtggactatgtggatacg
tctcaaaattcagttcatcttaaattactgcctcgaattgattatacacgtctcagaggt
gctcttcggactcctagtgatgaatctaaaaagataaaaaagaagagccctcctgcaaaa
ctttttgatcccgaaaagattcgttccattggtggtgaaatttcacatgatggtgacttt
ctcatgtttgaagggaatcgttattctcgcaagggttatctgtataaggactttgctatg
aatgcaattatttcagaaggagtgaagcctacccttgctgaattagagaaatttgaagaa
acgcctgagggattagatattgagctctcatctgctgataaagatgatgtcgtacatagt
ttttcaaacggtgataatgtggaagtaatggagggagagttggttaatctccaaggcaag
gtcatagcaattgatggtggtaaagtgacaattttacccaaacatgatgatcttaaagaa
cccatcgagtttcaagcttcagagttgagaaagttcttttctttaggaaaccgtgtcaga
gttattggtggaagatatgagggagataccggattgattgtgagagtacaagaaaattta
attgttctcttttctgatttaaccatgcatgagttaaaagttcttccaagggatcttcaa
ttatgtactgatatggcaactggggtggattctctgggtcaattccagtttggtgatatg
gttcaaattgattcttcaactgtgggtgttattgttcagattcagaaggaaaattttcaa
gttctaaatatgatgggaaaagtggttagtgtaaaacctcaggctcttcaaaagaaaaga
gagaatcgcaacgctgttgctattgattctgagcaaaatcaaataattaaaaaagacgtt
gtaaaagtgattgacgggcctcataatggacttcaaggtgaaattcggcatttatttcgt
agctttgcttttcttcatagtcgtaagatgattgataacggagggatctttgtctgcaag
tgtagacatttagtcatcgctggaggtaaaaataccaatcagaaccgtgtgggtggttcg
gccatgcctggatttatgtctccaaggcttagttcaccaatgcatccttctcagagtgga
agaggtgccggcggaggaggagcgggtcgtggaagaggaaggggtagaggagtaattgga
agagatcgggaactgattggaaagacgataaaaattacacaagggccgtataaaagtcat
attggtatcgtcaaggatgccacagagtcaactgctcgagttgaactccacgcaaaatgt
caaacgatttcagtagatcgggggcggattgaagttattggaaccccttcccagaatgtt
ggaagtgtgtctacttacacacgtacaccttcttatggatctggaagtggaacccccatg
tatgcccctggctcacgcactccaatgtatggatcacaaactcccatgtacgatggctcc
cgtactcctcactatggttccactactccatctcatgaagatggctctcgtacgcccgga
cgttctggttcaggagcttgggatccttctgtcaccaacacacccgctcctattcgggaa
tatgactttgatggccaatccggaagaagtggaggagagtcatcatctggtgcatttgat
gattcgccctctcctaattataatcccggtactcctggttatgctcaagaatctccatct
gcaccctatactcctgcaacgccaggctcagtctataatccaggtgaaggatattctcca
tatcaagcatccccatctccagctggctatcaatcgacgccaagtcctagttcgtatgtt
cccacaccaagccctggacaaaattatcaaccaagcccaagccctggttacgctgctcct
tctccgggccttggttacagccccatgactccaggaagtagtcatcatacaccctcgccc
tatgcagcaacgcctgggcaggcaactcagtctgaattggaatcaacggactggtattca
cccgatattgaggtcctgatttgtgatactcatgatgacacacgccttgtgggtcaaatc
ggtgtagttcgaggtgtaactccgggaatgtgctctgtgtatctacctgatgagtataga
acagtttccatcgctgcagatcatttgcaacccgtcaagcctgttagaggagataaagtt
aaagttatcatgggtgaggatcgagacgctactgggagtttactttccattgatagccaa
gaaggtgtcgtgaaactcgaaattgctggagatgtaaagatgttgcaattgaaatatttg
tgtaaaatgaagtctgatgactaa
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integrated database retrieval system
