Lepeophtheirus salmonis (salmon louse): 121116561
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Entry
121116561 CDS
T08214
Symbol
Helz
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121116561 (Helz)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
121116561 (Helz)
3'-5' decay
Other 3'-5' decay factors
121116561 (Helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
UvrD-helicase
AAA_19
ResIII
AAA_22
PAM2
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
121116561
NCBI-ProteinID:
XP_040566759
UniProt:
A0A0K2T1V9
LinkDB
All DBs
Position
4:10175034..10182064
Genome browser
AA seq
1704 aa
AA seq
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MMETWTKSEEEGEEEEEDGEDEDEEEEEEEEKGDEEALGGAGVKDLEEDEYENEEEEDDD
PRSVLSEETTAYTKGHTSRQQHVNNDDSLSNGHADKSLEDNSEEPQHDKTKNSNNTHNST
ISTNNVHRREARKERRLKEKRDKRQKNNKEWKCSYCSLSFLCRNEFLNHCSSQKHQQAIT
SDEGKHWNFRTPPRGFGSETYQMCQNMTVEGVCRHGDQCVDAHSKEELLEWKDRFDFRQK
KAFKANKILGKTFVDTVIEKLNNSSNPNALLRSSIDGTTCQVDTDLNISISNKVKNVEWV
FYIHSSKIVRHVALLSDENRIHFSIASVKHQGVSDTKEVLKTYNTDSSQEWIHPETNFFS
SCREMEYKIKIGFSADFFGTFNQTVVFNFGGSSDILLLKRDLRVDVTPEEKETDEPSNED
DDESKFNDVLIRQPDRWDESNSTIIDFDPPINVLSIEAKTLYMKYPPPQPSKFKLSQNVK
DTRLTKNNYRGRMHELLFIEEMAQYEQVSQFNVVAKLKLFSRYFLTPLSTTSSTAKYSRP
GELFGKMALGSNLNEDTSAGRLILTNCSTLLLSQSGFSAESGNKRDAFVSVIEDSGKNTL
YLRLSSEIVKRYELKEDDTFEVEIQFQLNRLPICEMHLAVDRLPDLELVYPNLDTEVVIP
WSTGKQWSDEFDGSLNPKQREAVLAITSPIDVILPPILIIGPYGTGKTFTLGQSLKMLLK
DRSNRILVCTHSNSAADLYIREYLHPYVTEMKAARDNVEETETSPIKVLRVYYENRWVKT
VHDTVLKYCLVTTTEHSRNFRNPTFEEVVDCHIVVATLSTSKSLTGLGLTKGHFTHVLID
EAAQAMECEAIMALALASTQTRVVLAGDHMQLSPEVFSKLALEKKFNKSLLERLYDFYPK
SNFPCKILLIENYRSHRAIIEYTSELFYEQKLLASGKQTRHDLWYPLTLFTARGEDVQDL
NSTSFYNNAEVYEVVERVTQLQLTWPKSWGRRDETSIGIVTPYYDQVQRIRSELRKRNLF
GVSVERVLNVQGKQFRAIFLSTVRTRKTCVMSQEDPEVDFGFLSNAKLLNTAITRAQSLV
AVVGDPVALCSIGKCRKMWEKFMEICNKGGSFFGLTYQALRAMLDNVEFKKTYVLNPYAP
IFVPRYAKQHQQLRVNNNNQRQNYQNLCRVNSIQGLFNPYVPPIPPPPPPPWMKYGPPPP
NIPPPMMNHGWPPLNHSGINDKSSSRNNTRSNGTLPPRHSSQFQGKFNRYESPPPLIGRN
AQQQNGRQHTNNNPLTSSSSSSSTSNSTIQNNDYLFLNDGVHFPGKQPPGANVSPFRNPP
PTSSSNQSQSNDDILQFALQLLPEDIKLATFLKSNQMQVAWYNHLQVSRSTKEATFFKNF
IIHLQSNPEIVLYLNKQLMNRKLMLNLNSDPQQPGSRGGGSIPFHPPPPAHPPHFSHHQP
QVASAILAQDLEAQFLQQDSIRANNPSGNNHFLGSQVDSNNYLLPSAKSTDHFFSLSNRT
EPSSTTGLINEPTILRNEEFDPQSLILSEILSSNNEKDLIFDSTKQLDPGPKVPLYMRRP
GISNEVVPHLQPPTTSDISTSFESSFSNINLDRTWGGVDYALASKHNTQPSSLIPSFDSS
SLFFNESSVDKPLTYANALLRNSTQENKSSEEERNSTDPLARIRSFGMSNVREDSYDLRV
RENSFIGSNNGGRIGDFRLFDNKF
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaacttggactaaaagcgaagaagaaggcgaagaggaggaggaggacggagag
gacgaggatgaggaagaagaggaggaagaagaaaaaggggatgaagaggctctgggaggc
gccggagtaaaggatcttgaggaggatgaatatgaaaacgaagaagaagaggatgatgat
cccaggagcgtcctaagcgaagagactacagcatacacaaaaggccacacttcaaggcag
cagcatgtcaacaacgacgactctttaagtaatggacacgcggataaatctctggaggac
aattccgaagagcctcaacacgataaaacaaaaaactcaaataatacacataatagtact
atcagcaccaacaatgtccatcgccgagaggctcgtaaagagcgacgcctcaaagagaaa
agagataaaagacaaaaaaataataaagaatggaagtgctcctactgctcactgtccttt
ttgtgtcgaaatgagtttcttaatcattgttcaagtcagaaacatcagcaagccattact
tcagatgaagggaagcattggaattttagaacacctccaagaggatttggatctgaaacc
taccaaatgtgtcaaaatatgaccgtagaaggagtttgtcgtcatggagatcaatgtgtt
gacgctcatagtaaggaagaactattagaatggaaggatagatttgactttcgtcaaaaa
aaagctttcaaagctaataaaatcctaggaaaaacatttgtcgacactgttattgaaaaa
ttaaataacagctctaatccgaatgcccttctacgaagttccattgatggcacaacgtgt
caggttgatacagatttgaatattagtatatctaataaggtgaaaaatgtggagtgggtt
ttttatattcattcatccaaaatagtgcgtcatgttgccctacttagtgacgaaaatcgg
attcatttcagtattgctagtgtgaaacaccaaggggtcagtgacacaaaagaagttcta
aagacctacaatacagactcttctcaagaatggatccacccagaaactaacttctttagc
tcatgcagggaaatggaatataaaattaaaattggattctccgcggatttctttggaact
tttaaccaaactgtagtgtttaatttcgggggctctagtgacatactacttcttaaaagg
gaccttcgagttgatgtaactcccgaagagaaagaaacagatgaaccgagtaatgaggac
gatgatgaatccaaatttaatgatgtattgatccggcaacctgatcgttgggatgaaagt
aattctaccataattgattttgatcctcctatcaatgtactttcaattgaggctaagacc
ctatatatgaaatatccacctcctcaaccctctaaattcaagctatcacaaaatgttaaa
gatactcgcttaacgaaaaataattacagaggtcgaatgcacgagttactctttattgaa
gaaatggcgcaatatgaacaagttagtcagttcaatgttgttgccaagttaaagcttttt
tctcgctactttttgacaccgttaagtactacatcaagcactgccaaatattctcgtcct
ggagaactttttggcaaaatggctctaggctctaatttaaatgaagatacctcagctggt
agattaattctaactaattgctcgacactcttgttatcacaatcaggattctctgctgaa
agtgggaataaacgcgatgcattcgtttctgttattgaggattctggtaaaaatactcta
tatttgcgtctctcctctgaaatcgttaaacgttatgagttgaaagaagatgacacgttt
gaagtagaaatccagtttcaattgaatcgacttcccatttgtgaaatgcatcttgcagtg
gatagactacccgatctagagcttgtgtatcctaatttagatactgaagtagttatacca
tggagtactggaaaacaatggtcagacgaatttgatggcagtttaaaccctaaacaaaga
gaagctgtacttgctattacttcccctattgatgtgattcttccacccattttgatcata
ggtccatatggaactggcaagaccttcactcttggtcaatctcttaagatgttgttaaaa
gatcgttctaatcggatccttgtttgtacacattcaaattctgctgcagatctttatatt
agagaatatcttcatccttacgttactgagatgaaagctgccagggacaatgttgaagaa
actgaaacttctcctattaaagttttaagggtttactacgaaaatcgatgggttaaaact
gtacacgatacagttcttaaatattgtttagtgacaactactgagcattcaagaaatttc
cgtaatccaacttttgaagaggttgttgattgtcacattgtggtagctacgcttagtaca
tcgaaaagtttgactggtctaggcctaactaaaggccattttactcatgtattaattgat
gaagctgctcaagcaatggaatgcgaagccattatggctcttgctcttgcttctacccaa
actcgtgttgttttagctggcgatcatatgcagttgagccctgaagtgttttctaaatta
gctttagaaaagaagtttaataaatctctgttggaacgtttatatgatttctatcccaaa
tctaactttccttgcaagattcttctcattgaaaattataggagccatcgtgccattatt
gaatatacttctgaattattctatgaacaaaagctgctagcttctggaaaacaaactcga
catgatctatggtaccctcttactctttttacagctcgaggtgaagacgttcaggacctt
aactcaacttcattttataataatgcagaagtctacgaagtagttgagcgcgttactcag
ttacaattaacttggcctaagtcttggggccgtagagatgaaacatcaattggtattgtt
actccttactatgatcaggttcaaagaattcgctcagaacttcggaaaagaaatttattt
ggtgtctctgtggagcgtgtactaaatgttcaagggaagcaattcagggccatatttcta
agtactgtacgtacccgaaaaacgtgtgtaatgagtcaagaagatccagaggtagatttt
ggatttctttcgaatgctaaacttcttaatacagctataactcgagctcaaagtttggtt
gctgtggtaggggatcctgtagccctctgttcgattggtaaatgtagaaaaatgtgggaa
aaatttatggaaatatgtaataaaggcggctcatttttcggactcacatatcaggcactt
cgtgccatgttggataatgttgagtttaagaagacttatgtattaaatccatatgcgcca
atctttgtccccagatatgctaaacaacatcaacagctacgtgttaataataacaaccag
agacagaattatcaaaacttatgccgcgtgaattctattcaaggattattcaatccatat
gttcctccaattccacctccaccccctcctccatggatgaaatatgggcctccaccacct
aacattcctcctcctatgatgaaccatggttggcctcctttgaaccactctggcataaat
gataagtcatcatctagaaacaacacgcgttccaacggaactcttcctccaaggcatagt
tctcaattccaaggaaagtttaatcgctacgaatcgccgcctcctctaattggaagaaat
gctcaacagcaaaatggtagacagcatacaaacaataaccccctaacttcttcttcctcg
tcttcttcaacctcaaattcaactattcaaaataatgactatttatttttgaatgatgga
gttcatttccccggaaaacagcctcctggagctaatgtatctcccttcagaaatcctcct
cctacttcctcatcgaatcagagccagtcaaatgatgatatcctccaatttgcccttcag
cttttgcctgaagacattaagttagcaacatttcttaaatcgaatcaaatgcaagtagca
tggtataatcatctccaagttagtagaagcacgaaggaagctacttttttcaagaacttt
attattcatcttcaatctaatcctgagatagtcttatatcttaacaaacaattaatgaac
cggaaactaatgcttaaccttaattctgatcctcaacaacctggttctagaggaggaggg
agtattccatttcatcctcctcccccagctcatcctcctcatttctctcatcatcaacct
caagtagcatctgctattttagctcaagatttagaagctcagtttcttcagcaagattct
atcagagccaataatccaagtggaaacaaccattttctcggcagccaagttgattcaaat
aattacttattaccctctgcgaaatctactgatcactttttctctttatcaaatagaaca
gagccgtcatcgactactggtttgataaatgagcctacaatattaagaaatgaggaattt
gatcctcagagcttgattctgtccgagattttaagttcaaacaatgaaaaagatttaatt
tttgatagtactaagcagttggacccagggcctaaggttcctctttatatgagacgtcca
ggaataagtaacgaagtagttccccatcttcagccacctactacgagtgatatttcaacc
tcatttgaaagttccttctctaatataaatcttgatcgaacctggggaggggtagattat
gctcttgcgtccaaacacaacactcagccatcttcattaataccaagttttgattctagc
tcgctattttttaatgagtcgtcagttgataaaccacttacctacgctaatgccctgtta
cgaaactcgacacaagaaaacaaaagctctgaggaggaaaggaattctacggatcctttg
gctcgtatacgaagttttggtatgagtaatgtgagagaggattcatatgatttaagagtg
agggagaacagttttattggaagtaataatggaggaagaataggggattttcgcctcttt
gacaataaattttaa
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