Lepeophtheirus salmonis (salmon louse): 121116830
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Entry
121116830 CDS
T08214
Symbol
Rubicon
Name
(RefSeq) uncharacterized protein Rubicon isoform X1
KO
K19330
run domain Beclin-1 interacting and cysteine-rich containing protein
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121116830 (Rubicon)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsm04131
]
121116830 (Rubicon)
Membrane trafficking [BR:
lsm04131
]
Autophagy
Other autophagy associated proteins
Others
121116830 (Rubicon)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RH_dom
RUBC_PIKBD
NOPCHAP1
Motif
Other DBs
NCBI-GeneID:
121116830
NCBI-ProteinID:
XP_040567061
LinkDB
All DBs
Position
4:10803044..10806587
Genome browser
AA seq
777 aa
AA seq
DB search
MNHDLKRLISGIESLLTGSGGTLVFHGSSVHFVGLDKLLRITKEILKNGSISLDTEGNPS
FLPFIMEILPLKSESEFDDWIKDKMANSLFSQALSSIVSAEDSLKRHYDMDSMLRCPNSS
EKLILAAKCLDEQDLPTLVALDLRRNNKCSYDKVPDQDIEPNTSSLKKDDVFFVTDERIC
SFSSSCPGLTELEIRRFLKRKNWIDDYDDSSPINSVDFIDKYKSPLPKELENTLRKQQSC
ETYHLGNRPKTSNASLSDIDDFFISDNSFVADHSSPIVPVRGTEILRNEKTKTKLISTPK
RTHRRTTSDTRVFQLMSSGSIIKSFSESLNKHDTDELDHNWSTITPPTEGWIMPLPMENE
SLYSYLSSGAFSRHQARLDRENAHLILAELIIQASTKKYGDPCMGKGVITASNFRPPAMP
SFGTSNRNMNIRENSAESVALSLLDQFDDKHETKASELNLILGDYQTTTELSFPSSDFNG
SQSQQERNSSGSVDHNTTCKDEIVTELRGTHDWAPPRPQLILQPHVHKSRTELLEEQKYR
CSGCAMKVEKKYSKIYRYCHYFGRLFCTGCHSNATHVIPANVIKKWDFKTYFVSDFASTV
LHSMYSDPLFNIQDLNPELLGKISKLRKAIEVRSLSTKIYHFVINCRLETQYMSEISNYP
VIDPYTFSLEDLCRIKSKNYSSVLSNLLENLMQHIVQCSVNIISVKPEDFYAKVAVHKMF
YSHLKRMFTNVLAVMLVITNLAILKIALNANVLIKGKTLRERSVYDMIFKKKYYFID
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatgatctgaagagactcatttctggaatagagtctctacttactggatctggg
ggtacactcgtcttccacggatcatctgttcattttgtggggttggataaattgctacgg
ataacaaaggagatcctcaagaatgggagcatatccttggatactgagggaaatccctcc
tttctccctttcattatggaaatattgcctctcaaatcagaatcagaattcgatgattgg
atcaaagataaaatggcgaattccttattctcccaggcgttatccagtatagtctcagcg
gaagattctttgaaacgtcactatgatatggattctatgttgagatgtcccaattcaagt
gaaaagttaatccttgcagcgaagtgccttgatgaacaagatttgccaacattggttgct
cttgatctccgaagaaataataaatgtagttatgataaagtacctgatcaagatattgag
cctaatacatcatcattaaaaaaggatgatgttttttttgtaacggatgaaaggatctgc
agcttttcgtcgtcttgccctggtttaactgaattagagatacgtcgatttttaaaaagg
aagaactggattgatgattatgatgactcttcgcccattaattctgtagactttatagat
aaatataagagtcctctccctaaagagctagaaaacactctccgtaaacaacaaagctgt
gaaacttaccatttaggaaatcggcctaagacttccaatgcatcattatcagatatagat
gacttttttatctctgataattcatttgtggctgatcatagctctcctatcgttcctgtt
agaggtacagaaatcctaagaaatgaaaaaactaaaacaaaacttatttcgactccaaag
agaactcaccgccgaacaacgtctgatacacgagtttttcaactcatgtcatctggatct
ataatcaaatcattttctgagtctttgaataagcatgatactgatgagctagatcataac
tggtccactattacgcctccaacagaaggctggattatgcccttgcctatggaaaatgaa
tcgctttattcttatttatcatctggtgcctttagtcgacatcaagctcgattagataga
gaaaatgctcacttaattcttgcagaattaatcatacaagcttccactaaaaaatatgga
gatccatgtatgggaaaaggagttataacggcgtcaaattttcgaccgccagctatgcct
tcatttggaacttccaatcgtaacatgaatatacgagaaaattctgccgagagtgttgcc
ctgtctctcttagatcagtttgatgacaaacatgaaaccaaagcatctgagctaaattta
atacttggtgattatcagaccactacagagctttcatttccttcttctgattttaatggt
agtcagtctcaacaagaaagaaatagtagtggttccgtagatcataataccacttgtaaa
gatgaaatcgttactgagcttagaggaactcatgactgggctcctcctagacctcagctt
atcttgcagcctcatgttcataaaagccgtactgagttattggaagagcaaaagtaccga
tgctctggttgtgcgatgaaagtggagaagaaatacagtaaaatttatcgatattgtcat
tattttggaagacttttttgtactggatgtcattcaaatgctactcacgtaattccagct
aatgtgataaaaaaatgggatttcaagacttattttgtcagtgattttgcgtcaactgtt
ctacactcaatgtactctgatccccttttcaatattcaagatttgaaccctgagctcttg
ggtaaaatatctaaactcagaaaagccatagaagttagatccttaagtactaaaatttat
cattttgtaataaattgtcgtttggaaactcagtatatgtcagaaattagtaactaccct
gtgattgatccctatacgttttctctcgaggatctttgccgtatcaagtccaagaactat
agtagtgtactttctaatctactagaaaatctcatgcagcacatagtgcaatgttcggta
aatatcatctctgtaaagccagaggatttttatgcgaaggttgccgttcacaagatgttt
tattcccatttgaaacggatgttcaccaatgtcctcgctgttatgcttgttatcacaaac
cttgctattttgaagattgctctaaatgccaacgtattgatcaaaggaaaaacgctgcga
gaacgatccgtatatgatatgatttttaaaaaaaaatactacttcatcgattaa
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