Lepeophtheirus salmonis (salmon louse): 121117143
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Entry
121117143 CDS
T08214
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121117143
04121 Ubiquitin system [BR:
lsm04121
]
121117143
Enzymes [BR:
lsm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121117143
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121117143
Ubiquitin system [BR:
lsm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121117143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
SGL
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-RING_2
Vgb_lyase
ANCHR-like_BBOX
WD40_WDHD1_1st
PhoX
Ig_GEX2_N
AcMNPV_P18
ARA70
Motif
Other DBs
NCBI-GeneID:
121117143
NCBI-ProteinID:
XP_040567410
LinkDB
All DBs
Position
5:complement(3286164..3291598)
Genome browser
AA seq
849 aa
AA seq
DB search
MSGGEDPSVGDTTLSCSLCGSLLKDARVLPCLHSFCKKCLLEQVKDLGKDEYPCPTCGKK
VELNYEDSIEALPMNTYYSHFTGLDAPESPIESDLERTATRKGPNRISALKASPQSSYPF
NVTPWHSCANSPRPSEPWHPAPEVTSMSVQSNDNSIWKSRFNLTPLLKTGPKTSDGTTHG
WQPLGEGLSVEPWNDNPTMSDSNSPPPLGGAKLLCSCTDNHPVISRCQDCLEDLCESCVN
AHQRVKLTRDHIIIRYPTPNENPVSKLDNVTTSNTNCSNAVLTPPVQNADVMRVYVDAVG
KAKADSEKYLNKAKLGMAQIDETKAGVHKMISRIDTRFQAVKNEVKSIAQRHVSAIQERE
QFLLMRLEKIQQVKFSNLEAQQNELSMSSLYLRKVIDQLTSCSKNGREMDLIDTCNKAVE
TIRKVQSQCGTLSVQEDDIIIFNPPDPSVHQEILTFGFIGGSGFAPASRAEGDGLYRGIL
GKEARFIVIVKDHLNEKRATGGDPIKVTILAPDTRPVRQTIFDGKNGTYRIAWKPNIEGE
HIVAVTLKDKHIQDSPFKVMIRSGRNYNTIGKPLFMFGGEGETDGQLCRPWGVTCSKDGS
IMVANRSNNRIEVYGKDGKFKYKFGTSGKLKGQFDRPASVVCDKMNRAIVADKDNHRIQI
FTVEGEFLMMFGEKGSKSGQFNYPWDVATNSKDQILISDTRNHRIQLFTPNGEFLAKYGF
EGTMWKHFDSPRGVCFTSDDQAVVTDFNNHRLLVVKSDFNIAQFLGKEGSENGMFTRPNG
VCVDEEGHIIVADSRNDRIQIFSSSGVFIKKFGSKGTGPGEFDRPSGICISPEGQLIVVD
FGNSRVQVF
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaggtgaggatccaagtgttggcgatacaactctttcttgctccctttgtgga
tctctcctcaaagacgcacgggtccttccttgtctccatagcttttgtaaaaagtgtctg
ttggaacaagtgaaagatctgggaaaggacgaatatccctgtccaacctgtggaaagaaa
gtggagctcaactacgaggattccattgaagccctacctatgaacacctactactctcat
ttcacgggccttgatgctccagaaagtcccatcgaatcagatttggagcgaactgccacg
aggaaaggccccaataggatttctgcccttaaagcatctccacaaagctcatatcccttt
aatgtaacaccctggcactcatgcgcaaattccccacgaccctctgagccatggcatcct
gccccagaagtcacatccatgtctgtgcaatccaatgataattccatatggaaatcacgc
ttcaacctcacacctctgctaaaaactgggccaaaaacctctgatggtactacccatgga
tggcagcctcttggagaaggtttatctgttgaaccttggaatgataatccaacaatgagt
gatagcaattcaccaccccctttgggaggtgctaaactcctctgttcctgtactgataac
catcccgttatatcacgctgtcaagattgcttggaagacttatgtgaatcatgtgttaat
gcacatcaacgcgtaaagttgactcgtgatcatatcatcatacgatatcccacacctaat
gaaaatcctgttagtaaacttgataatgtcacaacctctaacactaactgctcaaatgct
gtcttgaccccacctgtccaaaatgcagatgtaatgagggtttatgttgatgctgttgga
aaagctaaggctgactctgaaaaatatttgaacaaggccaaacttggtatggcacaaatt
gatgaaacaaaggctggagttcacaaaatgatatcaagaattgatactcgttttcaagct
gttaagaatgaagtcaaaagcattgctcaacgacacgtatcagctatacaagaacgtgag
caatttcttctgatgaggcttgaaaaaatacaacaagttaaattttccaatttagaagct
caacagaatgagcttagcatgtcatccctttatctcagaaaggttattgatcaattaaca
tcgtgtagtaaaaatggtcgtgaaatggatttaattgacacttgcaacaaggctgtagaa
accattagaaaggttcaaagtcagtgtgggactttgtcggttcaagaagatgatattatc
atatttaatccaccggatccttcggttcatcaggaaatactcacttttggttttattggt
ggatcaggatttgctcctgctagtcgagcagagggagacggtttgtatagaggcattttg
ggaaaagaagctagatttattgtgatagtcaaagatcatttgaatgaaaaaagagccact
ggaggagatcctattaaagtcactatattagctcctgatactaggccagtgaggcaaact
atctttgatggtaagaatggaacttaccgaattgcatggaagcctaatattgaaggtgaa
catattgtcgctgtaactttaaaagataaacatattcaggatagtccattcaaagttatg
atccgctcaggccggaattacaacacaattgggaagcctctcttcatgtttggtggagaa
ggtgaaacagatggtcaattgtgtcgtccatggggagttacgtgttcaaaagatggaagc
attatggttgcaaacagatcaaataatagaattgaggtttacggaaaagatggcaaattc
aaatataaatttggcacttcaggcaaattaaaaggtcaatttgatagacctgcctcagtt
gtttgtgataaaatgaatagagctatagttgctgataaggacaatcatcgtatacagatt
tttacagttgaaggagaatttttaatgatgtttggagaaaaggggtccaaaagtgggcaa
tttaactatccatgggatgtagccacaaattcaaaggaccagatactgatatctgatact
cgtaaccatagaatacagttatttactcctaatggagaatttttagccaaatatggattt
gaaggaacgatgtggaagcattttgattcacctcgtggtgtatgttttacttcagatgac
caggctgtggttacggattttaacaatcatagacttttggttgttaaatcggatttcaat
atagcacaatttcttggaaaagaaggttctgagaatggtatgttcacgaggccaaacggt
gtgtgtgttgatgaagaaggacacatcattgtagcggactctcgaaatgacagaattcaa
atcttttcttcatccggagtttttataaaaaagtttggatctaaaggtactggtcctggg
gaatttgaccggccttctgggatttgtatctctcctgaaggacaattgattgttgttgac
tttgggaatagtagagtgcaagttttttaa
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