Lepeophtheirus salmonis (salmon louse): 121117314
Help
Entry
121117314 CDS
T08214
Symbol
Rga
Name
(RefSeq) CCR4-NOT transcription complex subunit 2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121117314 (Rga)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121117314 (Rga)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121117314 (Rga)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121117314 (Rga)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
121117314
NCBI-ProteinID:
XP_040567638
LinkDB
All DBs
Position
5:complement(45152036..45157092)
Genome browser
AA seq
559 aa
AA seq
DB search
MDGLGSFEPLFFLSRSWLREVKMSSSTTTPTYLGLPPQHPPLGMGSLGNPSAVNSRSPLS
RSSNSNSAFNSAVGGDRLFSGNRSSVSSNANNLGMNNNSLPPSNNVLPVRNPLFNRDRSK
MECSLSPNTFDPSEFPSLGNRDNAAPNPSLSARPNYGNYDEFSSNLIRNYKKEPPFFLVG
MVKQPAMEASEFTMSNEDFPALPGYKPQSTSHLTGHHASGGPPGLNVPSSSLSLSGGLNN
VQQQSTNKLNNASQGLFSSETTMGPSSSSTSTSDHSSSSTHQQQQQPRGIITTPDGMVRN
IPPSMVTDQFGMIGLLTFIRAAETDPNLVSLALGAELTTLGLNLNSDVNLYPTFAGPWAE
TPCRPQDIDYHVPQEYLTNTAIRDKLAPVKLNRYKDDVLFYMFYTNVGDILQLAAAAELY
TRDWRFHKDDRVWITRAPGMAPSEKTASYERGTYYFFDVGNWRKVPKDFHLDYDKLEDRP
SLPTNLTTAAAGGPSSSTSSGSPAPPGAVGSLAAVSNGPSSTQSGIPSSGQPQHSPIAPV
QSQQLSNDSRGGVSSLGAP
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggatggactcggatcctttgagcctctcttcttcctttcccgttcttggttgagggaa
gtgaagatgagttcctcgacaacgacgcccacctacttgggccttcctcctcaacatcct
cctctgggtatgggaagtctggggaatccctcagccgtcaactctcggagtccgctctca
cgctcttcgaatagcaatagcgcctttaattccgccgtgggtggagatcggctcttctct
ggaaatagatccagtgtctcctccaatgccaacaacctgggcatgaataacaatagtctc
ccaccttccaacaatgtcctccccgtcaggaatcctctcttcaatcgagatcgaagcaaa
atggaatgcagtctgagcccaaatacatttgatccttctgaatttccctcattgggaaac
agagacaacgcggctcccaatccctctttgtctgctcgaccaaactatggtaactatgat
gaattcagctctaatctcattcggaattataaaaaagaaccccccttctttttagttggg
atggtgaagcaacctgccatggaagcgagtgagtttacaatgtcgaatgaagattttccg
gctcttcccgggtacaagcctcaatcaacgtctcatttgacgggtcatcatgcctcagga
ggacctcctggtttaaacgttccatcatcttctttgtccctgagcggaggattaaataac
gtccaacagcaatcgacgaataaattgaataatgctagtcagggacttttttcttcagaa
accaccatgggaccttcctcttcatccacctccacctccgatcattcttcctcctctact
catcaacagcaacagcaaccgcggggtatcatcacaacgccagacggtatggtaagaaat
attcctccttccatggtcactgatcaattcggaatgatagggttgttaacatttatccga
gcggctgaaacggatccaaatttggtttctttagctctaggtgcagaattgacaactttg
ggtctgaatctcaattctgacgtaaatttatatcctacgtttgcgggaccttgggcggag
acaccgtgccggccgcaagacatcgactaccacgttccacaagaatacctaacaaacact
gctattagagacaaattagctcctgtgaagctcaaccgatataaggatgatgtccttttt
tatatgttttacacgaatgttggtgatattttgcagttggccgcggcagctgaattatac
actagggactggaggtttcataaagatgaccgggtatggataacccgtgctcctggtatg
gcaccgtcagaaaaaactgcttcctacgaacgtggaacttactatttttttgatgttggt
aattggagaaaagttccgaaagactttcatctcgactatgacaagttagaggatcgaccc
tcattgcccacaaatttgactactgctgctgccggaggacccagctcatcaacatcatcg
gggtcaccagctccaccaggggcggtaggctccctagcagccgtctcaaatggtccttct
agcactcaatctggtattccatcgtcggggcaaccgcaacatagccctatcgcgcctgtt
cagtcgcaacagttgtctaatgatagtcgaggcggcgtatcttcgctcggagctccatag
DBGET
integrated database retrieval system
