Lepeophtheirus salmonis (salmon louse): 121117397
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Entry
121117397 CDS
T08214
Symbol
Caper
Name
(RefSeq) RNA-binding protein 39
KO
K13091
RNA-binding protein 23/39
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsm03041
]
121117397 (Caper)
Spliceosome [BR:
lsm03041
]
Common components
Common spliceosomal components
General mRNP proteins
121117397 (Caper)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_7
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
121117397
NCBI-ProteinID:
XP_040567747
UniProt:
A0A0K2TMK8
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All DBs
Position
5:41980650..41984590
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AA seq
527 aa
AA seq
DB search
MGDEVDVDALLEEPYKKCIEDEGRKENGSKRRSKTRSHSKERGYRRSRSRERRKRSRSKE
KRHSRSRERKRSRSKDKRRSRSRDRKRSRSREIRIKEVRRSRSRDRIRRSRSRSRSRSRK
YSPRRRYSPKGEKYGRGRSPSPRARSPEVPLTPEERDARTVFIMQLSQRVRSRDIEEFFS
SVGKIRDVKLIICNKTRRFKGIAYVEFRDLESIPYALGLNGQKLCGVPVIVQPSQAEKNR
VGNYNESAGKPERGPMKLYIGSLHFDITEEMLRGIFEPFGKIMSIQLMMDTDTGRSKGYG
FLTYAEAEDAKKALEQMNGFELAGRPIKVGTVNERPAEVSVGPKGLDDLDRSGIDLGATG
RLALMAKLAEGTGMKLPQAANQALQAPVVHHPTVPPHVQQQNMQIQQQAAASALGAPPIA
TQCFMLSNMFDPATETAPNWVEEVRDDVIDECNKHGGILHIYVDRVAPQGNVYVKCPSIA
TAVAAVNALHGRWFAGKVITAAYVPLVNYHNLFPDSIPPGPILTTRR
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgaagtggatgtggatgcgctgctggaagagccctacaagaagtgcatagag
gatgaaggtagaaaagaaaatggatccaaaaggaggagtaaaacgagaagtcatagtaaa
gaaagaggttatcggcgatcaagatcgcgagaaaggcgtaaaagaagtcgtagtaaagaa
aaaagacacagtcgcagccgagagaggaaacgaagcaggagtaaggataaacgacgaagt
agaagccgggacagaaagaggagtagaagtcgagagatccgtattaaagaggtacgtcga
agccggagcagagaccgaatcaggagatcgcgatctaggtctcggtcaagaagtcgcaaa
tattcaccaagaagacgttactctcccaaaggtgaaaaatatggtaggggaagatcacca
agtccaagagctagatctccagaggttccgcttacccctgaagaaagagatgcaagaaca
gtttttatcatgcagttgtcccagcgtgttcgttctagagatattgaagagtttttttca
tcagtagggaagattcgagatgttaagctcatcatatgtaacaaaacgcgtagatttaaa
ggaattgcctatgttgaatttagggacttggaatctatcccatacgctcttgggttaaat
ggtcaaaaattatgtggggttccggtcatagttcagccatcacaggcagaaaaaaataga
gttggaaactataatgaatcagctggaaagcctgaaaggggaccaatgaagttgtatatt
ggctctttacattttgacatcactgaagaaatgcttagaggaatttttgaaccttttggt
aaaattatgtccatacaactaatgatggacactgacactggtcgatccaaaggttatggt
ttcttgacatatgctgaggcagaggatgctaaaaaagcactggagcaaatgaacggcttt
gagctagctggcaggcccataaaggtcggaactgtaaatgaaagaccagctgaagtatct
gtgggtcctaaaggtctcgatgatcttgataggtctggtattgacttaggagctactgga
agattagctctaatggctaagctcgcggagggtactggcatgaagcttcctcaagccgcc
aatcaagctcttcaagcacctgttgttcaccacccaacagttccacctcatgttcagcag
caaaatatgcaaatacaacaacaagccgcagcttctgctcttggagctccgcctatagct
acacaatgttttatgctctctaatatgtttgaccctgcaacagaaacagccccgaattgg
gtagaagaagtgcgggatgatgttattgatgagtgtaataagcacggaggtatcctccat
atatatgttgatagagttgctccacagggtaatgtttatgttaagtgtccttcaatagcc
actgcagtagctgcagtcaatgccctacatggaaggtggtttgctggcaaggtaataacc
gctgcttacgtaccattggttaactaccacaatttgtttccagattctattcctcccggt
ccaattttgacaacccgcagataa
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