Lepeophtheirus salmonis (salmon louse): 121117925
Help
Entry
121117925 CDS
T08214
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1 isoform X1
KO
K05034
solute carrier family 6 (neurotransmitter transporter, GABA) member 1
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
121117925
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lsm02000
]
121117925
Transporters [BR:
lsm02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
121117925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
121117925
NCBI-ProteinID:
XP_040568385
LinkDB
All DBs
Position
5:67196806..67210871
Genome browser
AA seq
622 aa
AA seq
DB search
MSSTEQPKEPTPPPSYEDATKVVDLESEKPKLLDESSTKGEERGYWKNPWDFLFSCISVS
VGLGNVWRFPYLCYKNSGGVFLIIYFITMIFCGIPIFLMEVAIGQYLGAGGMTTIGQICP
IMKGVGIATMVMVTFYNIYYCIIVAWSIFYFIASFVSIPGLPWESCDRYWNTANCWTQNI
SSTPFNDSTTPVEEFWTFRVLKMNGGIEYGLGSLNWELVGTLLIGWILVYLIICRGLHQS
GYVIWFTALFPYFVMITLLVRALTLEGAIDGLKAYVKLDWRYFYKGSTWIDAATQIFFAY
SVGTGALPALGSYNRFNHNCFRDAFITCVINTATCLMAGVLVFSILGYMAHLYGTTVDQV
AASGPGLVFITYPELVLNLPISYFWAIIFFSMLLVLGIDTEFCSVESLITGIVDNWSTQL
LPHRNKVAMGVCVCLFFLGLPMVTEGGIYLFQIMDFYSASGMSLLWICFFETIAISWFYG
AEKFSDNIKEMIGRRPNLFLRLCWKFFGPFVMAGVFIYYCISYSPVEFGEYQYPKWSEVM
GLLISFSSMIWIPGYAVYYILNQPGSLIQNIKMGMISQINVRRDALCSSSTPTAPLVSQV
SVPTIITTDLNNVNESSPFITK
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtacagaacaaccaaaggagccaacacctccaccaagctatgaggacgcaaca
aaagtcgtagacctagagagtgagaaaccaaagcttttggatgaatcttctaccaaagga
gaagaaagagggtattggaagaatccctgggactttttattctcttgtatatctgtctct
gttggattgggaaatgtttggagatttccttatttatgctataaaaacagtggaggtgtt
tttctcatcatatatttcatcacaatgatattttgtggaatacccatatttcttatggaa
gtagccataggacaatatcttggtgcaggaggaatgacaacaataggtcaaatttgtccc
attatgaagggtgttggtatagcaaccatggtaatggttacgttctataatatatattat
tgtattatcgtcgcttggtcaatattttacttcattgcatccttcgtatccatcccagga
ttaccttgggagtcatgcgatcgttattggaacactgcaaattgttggactcaaaacatt
tcttccactcctttcaacgattccactacacctgtagaagagttctggacatttcgtgtt
cttaaaatgaatggggggattgaatatggactcgggagtttgaattgggagctagtcgga
accctgcttattggatggatacttgtatatcttatcatttgtcgtggactccatcaaagt
ggatacgtcatttggtttacagctttgtttccatatttcgtcatgattactcttctcgtt
cgagccctcacattggaaggagcaattgatggacttaaagcttatgttaaactggattgg
agatatttttacaaagggagcacttggattgatgcggctactcagattttctttgcttac
agcgttggtacaggcgcattgcctgctttgggatcatataatcgattcaatcataactgc
tttagggatgcattcattacttgtgtaataaacacagccacttgcttgatggctggtgtt
ttagtcttctccattttggggtatatggcacatctttatggaacaactgttgatcaagtc
gccgcttctggacccggattagtctttattacatatcctgaattagtactaaatcttcca
atctcatatttctgggcaattatattcttttcaatgcttttggttttgggaatcgataca
gagttttgcagtgtagagtcccttattactggtattgtggataattggtctacccaactt
ttgcctcatcgtaataaggtagcaatgggagtttgcgtgtgtctttttttccttggactt
cctatggtaactgaaggagggatttatctattccaaattatggatttctattctgcatct
ggaatgagtcttttatggatttgtttctttgaaacaattgctatttcatggttctatgga
gcagaaaagtttagtgacaacattaaggaaatgatcggaagaagacccaatttatttttg
agattatgctggaaattttttggaccttttgtgatggctggagtatttatttattattgt
atatcttactctcccgttgagtttggtgaatatcaatatcctaaatggtctgaagttatg
ggactactcatttcattttcttctatgatttggattcctggatatgcagtctactacatt
cttaatcaacccggaagtttgattcaaaatatcaagatgggaatgatatctcaaatcaat
gttcgaagagatgctctttgttcttcaagtactccaaccgcacccttggtttcacaggtc
tctgttcctactataataacaacagacttaaacaacgttaatgaaagttcaccattcatt
actaaataa
DBGET
integrated database retrieval system
