Lepeophtheirus salmonis (salmon louse): 121117958
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Entry
121117958 CDS
T08214
Name
(RefSeq) LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 23-like
KO
K15166
mediator of RNA polymerase II transcription subunit 23
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121117958
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Other mediators
121117958
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med23
PRIMA1
Motif
Other DBs
NCBI-GeneID:
121117958
NCBI-ProteinID:
XP_040568431
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All DBs
Position
5:68562099..68566665
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AA seq
1388 aa
AA seq
DB search
MSLPSSVVESGPQSTNSEGLSKTVKGKEEEEGLKRAFNLYLAKEDDEKEGSAKRKKNELG
QSIQDTDALRSFVAEAANSPRMEEMMESLLENKDLSPRVVSDALLSSEALHFKNEPFWIK
TLSVLKALLPGVDYKGVREIMKIAIEKVLLFPPQGLEPSLVAPLSALENLLKYIFDREAA
LLPGYFIVNEILKSYPENPRWPHWKLIPMISSFLNSFTQTAQMVSCAYRHRLRPIVEHYG
KAHVVSTWKLDSNSLKILLKGNQTYERILPYSKEMVEPQTGLLLYVLRQPYSKELAINIL
GLQKPRKDASSNVAPGALCPALEEVLVNLFVDAMNELSELELDSSLLEYELERRLENNRE
LWRNLSSELIFFILFQFINFGNFTNALYEKLSAPGEAKSGRDELIWALLQYISGCITKNM
IWDFVHALRLINLLYNDKEPIPIPDLNDPNAVKSLSAAAVYIQLSHRARQTEQQPSLSYA
LPSCLRLHHEFLLNLANVNEGRLGTSLSVTGNEFYMVPVMCNTYSTQDCFQLPIGVLMAT
IGGIVAENMNPANIIEPLPMETLDCLSVHVKMSLIHSIVTHIQKQVSNKTNTALAPALIE
TYSRLLVYPELESLGIKGLLNQLLPLVFKQGAWNILHVLLEIFSYRLHHIQSHFRLSLLN
HLQQGILLSKHTQLNLCIESTTLKLITGLGNAEVSPPKKFLSNSQGKPVSTVLYGESEEL
NRVVVLTLARAIHIYGLENQSAIWVKDVLTSVMTLTPHSWPSHTLSNFPTILQDFFKENP
GPKENKAQLKSRVEEEYKTWSSMSNEHDIVQHFSNSNNTLFLCVFWKMLLETDHVTPIAY
RVLERIGAAKALTAHLRSLCDMLVCEFSKSGGSGHVKNCIDALNNLIWKYKIVSLDRLIL
CMALRTHEGSEAQVCFFIIQLLLLKPHDFRNRVSEFVRTLSPEHQLLKDFHSKHSEFHQK
FPEKFGPDDHSTSPEAPLPVYFSNVCLRFIPVFDIVVHRFLELPPVAKSLETLIDHFSVL
YKFHARPITYLYNTLHYYEKRVRDKPSLKKKLVRSITGALKDIRPNGWCLTEEYLNYLAV
GEQVTWTHNIEYYVSLIGRLAKSIQGKNAFPKMDWRFNEFPNEGVHAMYVTCVEVMGLPV
EPLKVGEYFLEAIWEAHRYIPQDEIPDWINAVGIIISNLPEAYWEGLYIKLVQALTSPPL
SQWNLSQTPFRVFNFQATHLVHCQHKLTYLLAISHSVWHHAGFNQIQLLPDLVRDKFLPV
VKTEEQLIFVYHLMGPFLQRLHSERYMRPLFDLTVSLYRVLNRVDKECKVLKYVDPICDI
LYHVKYQFTGDSVKSDAERIVKDLRPALQRRLRFIAPGILQPKPPAPAPPPTPPSATSTS
TTTPQTNT
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgccgtcgtctgtggtggagtcagggccacaatcaacgaattcggagggtctt
tcgaaaactgtgaaaggaaaagaggaagaagaaggcttaaaaagagcctttaacctgtat
ttggccaaagaggatgatgagaaggaaggatcggccaagaggaaaaagaatgaattgggg
caatccattcaggacacggatgcacttcgtagtttcgttgcagaagcagcgaatagtcct
agaatggaagaaatgatggagtcactcttggagaacaaggatttgagtcctcgagtagtt
tctgatgctcttttatcgtctgaggcacttcattttaaaaatgagccattttggatcaaa
acactctccgtgctcaaagctctactcccaggagttgactacaaaggtgtcagagaaatc
atgaaaattgctattgaaaaggtattacttttcccgcctcaaggattggagccctcctta
gttgctcctctctctgccttggaaaacttgctcaaatatatttttgaccgtgaagcagct
cttctacccggatatttcattgtgaatgaaatattgaaaagttatccagaaaatcctcgt
tggcctcattggaagctcatacccatgatttcctcattccttaattccttcacccaaacg
gcccaaatggtgtcttgtgcatatcgtcatcgtctcaggccgattgtagagcactatggc
aaagcacatgttgtatctacatggaagttagattccaattctctaaaaatactcctcaag
gggaatcaaacttatgaaagaattttaccgtactctaaagaaatggttgagcctcaaacg
ggtcttcttttatatgtccttcgtcaaccatattctaaagagttagcaataaatatttta
gggctacaaaaaccgagaaaagatgcatcaagtaatgtagctccaggtgcactttgtcca
gcccttgaagaagttcttgttaatttatttgttgatgcaatgaatgaattgtctgaattg
gagttggatagttccctgttagagtatgaattggaacgtcgcctcgagaataatagagaa
ttgtggagaaatttatcatctgaactcatattttttattcttttccaattcattaatttt
ggaaatttcacaaatgcattgtacgaaaagctgtctgctcctggagaagcaaagtcagga
agggatgaactaatatgggctttacttcagtatatatctggttgcattactaaaaatatg
atatgggatttcgttcatgctcttcgactcattaacttactttacaacgataaggaaccc
attcctataccagacttgaatgatccaaatgcagtcaaatccctttctgcggcagccgtg
tatatccaactttctcaccgtgcaagacagactgaacaacagccttcattatcgtatgct
ctcccaagttgtttacgattacatcatgagtttctgttaaaccttgcaaatgtgaacgaa
ggtcgactggggacttcgttatctgtaactgggaatgagttttatatggtacctgtaatg
tgtaatacatactctacgcaagattgttttcaattacctatcggagttttgatggcgaca
attggtggaattgtggctgaaaacatgaatccagcaaatattatagaaccccttccaatg
gaaactttggattgcctctctgttcatgtaaaaatgagtttaattcattccattgttact
catattcaaaagcaggtgagcaataaaaccaatactgcgttagctccagcattaatagaa
acatatagtcgtttacttgtttatccggaactggaatcgttgggtattaaaggattgctg
aatcagttacttcctttagtctttaagcaaggcgcttggaatattcttcatgttctcctg
gaaatattttcatataggctacatcatatacaatctcattttcggttatccttgttgaac
catctgcaacagggtattttactctctaaacatacacaattaaatctttgtattgaatca
acaactttaaaattaataactggacttggaaatgctgaagtgtctcctcccaaaaaattc
ctctctaattctcaaggaaaaccagtatctacagttttgtacggagaatcagaagaactc
aacagagttgtagttttaacattagcccgggctattcatatttatggactagaaaatcag
tctgccatttgggttaaggatgtattaacaagtgtaatgactctcacaccacattcatgg
ccatcacatactctatccaattttcctacaattctccaagacttttttaaggaaaatcca
ggacctaaagaaaataaagctcagttaaaaagtcgtgtcgaagaagaatataaaacttgg
agctctatgtcaaatgagcatgatattgttcaacatttttcaaattctaataacacgtta
tttctttgtgttttttggaaaatgttgcttgagacagatcatgtcactcccattgcgtac
agagttttagaaaggattggagctgcaaaggcccttacggctcatttgagatctttatgt
gatatgttggtatgcgaatttagtaaaagtggaggatcaggtcatgtgaaaaattgcatc
gatgctctaaataatttgatttggaagtataaaattgtgtcactagatagacttattctc
tgtatggctcttcgaactcatgaaggtagtgaggcacaggtatgtttttttattatacaa
ttgttgctgctcaaacctcatgactttcgtaatcgggttagtgagtttgttcgtactctg
tctcccgagcatcaacttttaaaagatttccatagcaagcattcagagttccaccaaaaa
tttcctgagaaatttggtccggatgatcactcaacatcacccgaagcccctcttccagtt
tacttcagcaacgtctgcctccgttttattcctgtttttgatattgttgttcacagattc
ttagagcttccgccagttgccaaatccttggaaacactaattgatcattttagtgtatta
tacaagtttcacgcacggcccattacgtatttatacaacaccttacattactatgaaaag
agagttcgtgataagccttctcttaagaaaaagcttgtacgcagtattactggggcactc
aaagatattcgacccaatggatggtgtctcaccgaagagtatttaaattacttagctgtt
ggagagcaagttacttggactcataacattgagtattatgttagtttaatcggtagatta
gcaaaatcaattcaaggaaaaaatgcatttcctaaaatggattggcgatttaatgaattt
cctaatgagggtgttcatgccatgtatgttacatgcgtagaagtaatgggacttccagtg
gaacctttgaaggttggtgaatatttcttagaagccatctgggaggcccatcgttacata
ccacaagatgaaattcctgactggatcaatgctgttggtataataatctcaaacctacca
gaagcatactgggaaggactttacatcaaattggttcaagccctaacttctccccctctg
tctcagtggaatttatctcaaacaccgtttagagtatttaattttcaagcaactcatcta
gttcattgtcagcataaattaacttacctattagcaataagtcattccgtttggcaccac
gctgggtttaatcaaatccaacttcttcccgatttagttcgtgacaaattcctaccagtt
gttaaaacagaggagcaacttattttcgtgtatcatttgatgggaccatttctacaaaga
cttcactcagaaaggtatatgagacctttgtttgacctaaccgtttccctgtatagggtt
ttaaatcgtgtggacaaagaatgtaaagttttaaaatatgttgaccccatttgtgatata
ctataccatgttaaataccaatttactggtgattcagtcaaaagtgacgcagagcgaatc
gtgaaggacttgagaccagccttacagcgaagacttcgatttattgctcctggtattctt
caacccaaaccgcctgcccctgctcctcctccaacacccccctcagccacctctacatct
acaactacgcctcaaacgaacacttaa
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