Lepeophtheirus salmonis (salmon louse): 121117981
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Entry
121117981 CDS
T08214
Symbol
Cpsf73
Name
(RefSeq) cleavage and polyadenylation specificity factor 73
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121117981 (Cpsf73)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121117981 (Cpsf73)
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121117981 (Cpsf73)
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121117981 (Cpsf73)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121117981 (Cpsf73)
U7-dependent histone pre-mRNA processing factors
121117981 (Cpsf73)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
121117981
NCBI-ProteinID:
XP_040568455
LinkDB
All DBs
Position
5:68520904..68523256
Genome browser
AA seq
679 aa
AA seq
DB search
MEKNGEDSDRMVFRPLGAGQEVGRSCHLLEFKDKRILLDCGIHPGLSGMDALPFVDLIEA
DEIDLLLVSHFHLDHAGALPWFLEKTTFKGKVFMTHATKAIYRWLLSDYIKVSNISTEQM
LYSEQDLEASMEKIQTLNFHEEKEVKGIRFWAYNAGHVLGAAMFMIEIAGVRTLYTGDFS
REEDRHLMAAEVPSLKPHVLILESTYGTNIHEKREDRESRFTSTVHDIVTRGGRCLIPVF
ALGRAQELLLILDEYWGAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNERIRRQISVNN
PFVFKHISNLKGIDHFDDVGPCVILASPGMMQSGLSRELFESWCSDPKNGCIVAGYCVEG
TLAKHILSEPEEVASMNGQKLPLKMQVNYISFSAHTDYKQTSGFIRELKPPHVILVHGEA
NEMSRLKSALIREYEADPSTKIDFYNPRNTVSVDLFFRGEKMAKVMGSLAVDPPIQEHRV
SGILVKRNFNYHILSPSDLPKYTDMTTSVVTQRQSIYYSGSFQLLQFMISQFGCDVTTPK
EKEKKKKYIRVFDSIDVIHEDKMITLEWIASPVNDMYADAVLSAILQAESLDTPQYIPAN
ARVDKMHFKECCIELLQDMFGEESVPKTFSGDKFGVIVHNKKALIDLKTLEVSCNEDETF
GKIVETAITKLHESLVPLD
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaatggcgaggattcagataggatggtttttcgtcctcttggggcaggccaa
gaagtcggacgatcatgtcatttattagaattcaaagataagcgaattttgttggattgc
ggtatccatccaggattatctgggatggatgctcttccattcgtggatctgattgaggcg
gatgaaattgatttactcttggtgagtcattttcatttggatcatgcgggtgcactccca
tggtttttggaaaagacaacgtttaaaggaaaagtgttcatgactcatgcaacgaaagcc
atttatcgatggctcctctcggactacattaaagtgtccaatatttccacggaacagatg
ctctattcagaacaagatttagaagcctctatggaaaaaatacaaaccctcaattttcat
gaagaaaaagaggtgaaggggatccgtttttgggcttataatgctggtcatgttttaggg
gctgctatgttcatgattgaaattgcaggtgtgcgcactctttacactggagatttctct
cgtgaagaggatcggcatcttatggctgcagaagttccttcactgaagcctcatgtcctt
attttggagtccacatacggtacaaatattcatgaaaagagagaagatcgtgaatctcgc
ttcacatccactgtacatgatatagttacccgaggaggacgttgtctcatccctgtattt
gctcttggtcgagctcaggaactccttttgattttagatgagtattggggtgcacatcct
gagctacatgaaatcccaatttactatgcctcatctctcgcaaaaaagtgtatggcggtg
tatcaaacatttgtaaatgccatgaatgaacgcattaggagacaaatttccgtgaataat
ccctttgtttttaagcatatctctaatttaaaaggcattgatcactttgacgatgtaggg
ccatgcgttattcttgcatctccgggcatgatgcaaagtggtcttagtagagaacttttt
gagtcctggtgttcagatcccaaaaatggatgtattgttgctggttattgtgtcgaaggt
acacttgctaagcacattctctctgagcctgaagaggtggcttctatgaatggacaaaaa
ttacctcttaagatgcaggtcaattatatctccttttcagctcacactgattataaacaa
acatctgggttcatacgagagctaaaacctccgcatgtcattcttgtccatggagaggca
aatgaaatgtcaagactcaaatccgctctaattcgtgaatatgaagcagatccatcaacg
aaaattgatttttacaatccaagaaatacagtgtcagtggatttgtttttccgtggtgag
aagatggctaaagttatgggatctctcgctgttgatccacctattcaagagcacagagta
tctggtatactcgtcaaaaggaactttaattatcatattctatctccttctgacttaccc
aaatatactgatatgacaacatcggtcgtaacgcaaagacaaagtatctattactctgga
tccttccaattacttcaatttatgatttcacaatttggttgtgatgtaacaactccaaag
gaaaaagaaaagaaaaagaaatacattcgagtattcgattccattgatgtcattcatgaa
gacaaaatgattacgcttgaatggatagcgtctccggtgaacgatatgtatgctgatgct
gttctgagtgccattttgcaggcagaatctttagatactcctcagtacattccagctaat
gctagagtcgacaaaatgcattttaaagaatgctgtatagaactactccaagacatgttc
ggggaagagtccgtaccaaagacttttagtggagataaatttggagtcattgttcataac
aaaaaggctttaatagatttaaaaaccttggaagtttcttgcaatgaggatgaaaccttt
ggaaaaatagtagaaactgctattacaaaactacatgaatcccttgttcctttggattaa
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