Lepeophtheirus salmonis (salmon louse): 121118296
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Entry
121118296 CDS
T08214
Symbol
Vps36
Name
(RefSeq) vacuolar protein-sorting-associated protein 36
KO
K12190
ESCRT-II complex subunit VPS36
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121118296 (Vps36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsm04131
]
121118296 (Vps36)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsm04147
]
121118296 (Vps36)
Membrane trafficking [BR:
lsm04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
121118296 (Vps36)
Exosome [BR:
lsm04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121118296 (Vps36)
Exosomal proteins of colorectal cancer cells
121118296 (Vps36)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAP30
Vps36_ESCRT-II
Motif
Other DBs
NCBI-GeneID:
121118296
NCBI-ProteinID:
XP_040568804
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Position
5:53349817..53351440
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AA seq
380 aa
AA seq
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MNRFYPGSDNPHPGEFLLGEQDGVYLYQGHDKTRFKNGILKLTSHRLIWGEENLSLDLGS
IMLTKDEEAGTFSLRSSKIALHLLPATRSSPLSNEFNEKEDFVRLSFHSGGMKSFYSKLT
DALAQQQWLIRSSSANPSRKVLPVKKIRSGISGIERSIATRAKERNSTISQAFQDLDQLM
EMAKPMVALSKSISSKIREKKGNITEDETIQFKSYLLSLGISDPVTRESHGSGEKYHLQL
AKEIFTILESPMKDAGGTITLTDAFCRVNRARGMELLSPEDLLNACKVMKQAGVPLILKT
FDSGLSVLVNNENTEDIQKDTLSLVKENTCLTPDELSRLIALSVVLSRERLFSAEKAGLL
CRDDSVEGLKFYPNRFLFDE
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgtttctatcctggaagtgataatccccaccctggggagtttctcttaggagaa
caagatggggtctatttgtatcaaggccatgataaaactcgttttaagaatggaatctta
aaactcacgtctcatcgccttatttggggagaagaaaacttatccttagatctgggatcc
atcatgctcacaaaggatgaagaagctggtactttttcgcttaggagtagtaaaattgct
cttcatctcctaccagccactcgttcctctcctttgagtaatgagttcaatgaaaaagag
gactttgtgagactctcatttcatagtggaggaatgaaatcattttattctaagcttacg
gatgctctagctcaacaacagtggcttattagatcctcaagtgcaaatccatctcgaaaa
gtcctccctgttaaaaaaatacgttctggtataagtggaatagaaagatcaatagctaca
agagccaaagaacggaattctaccatatctcaagcatttcaggatttagatcaattaatg
gagatggccaaacctatggttgctttatctaaatccatatcttcaaagattcgagaaaaa
aaaggcaatataaccgaagatgaaactattcagtttaaatcttatttgttgagtttgggt
atatctgatcctgtcactcgtgaatctcatggatctggtgaaaagtatcatttacaattg
gcgaaagagatttttactatattggaatctcccatgaaggatgctggtggcacaattaca
ttgacagatgcattttgccgagtaaatagagctcgaggtatggaattactctctcctgaa
gatttactaaatgcttgtaaagtcatgaagcaggcaggagtgcctttgattttaaagact
tttgattctggactctctgtactagtcaataatgaaaatactgaggatattcaaaaagat
actcttagtttagtcaaagaaaatacatgtttgacaccagatgaattatcgaggttgatc
gctctttccgttgtcttatctagagagcgacttttttcagctgaaaaggccggattactt
tgtcgcgatgactctgtagagggtttaaaattttatccaaatagatttttattcgatgaa
tag
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