Lepeophtheirus salmonis (salmon louse): 121119038
Help
Entry
121119038 CDS
T08214
Symbol
Atg17
Name
(RefSeq) uncharacterized protein Atg17 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121119038 (Atg17)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lsm01009
]
121119038 (Atg17)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsm04131
]
121119038 (Atg17)
03029 Mitochondrial biogenesis [BR:
lsm03029
]
121119038 (Atg17)
Protein phosphatases and associated proteins [BR:
lsm01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121119038 (Atg17)
Membrane trafficking [BR:
lsm04131
]
Autophagy
Autophagosome formation proteins
ULK complex
121119038 (Atg17)
Mitochondrial biogenesis [BR:
lsm03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
121119038 (Atg17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG17_like
ATG11
TBK1_ULD
Motif
Other DBs
NCBI-GeneID:
121119038
NCBI-ProteinID:
XP_040569589
LinkDB
All DBs
Position
5:24028989..24034688
Genome browser
AA seq
1245 aa
AA seq
DB search
MLYIFLVDNGSMLQLDMNLAVETVGSLKGVLEAQTQIPVEKQILLISGGESCDEEQKVCK
YTAGTDTNPIFLFSMSSIEEGGGGCPPLMPSNPNQDMNSDRLKNKVESALSLPDASSTVA
IRATIAQEFVEASREQSRLCETLIHDQHLQHQGWSAVVANLEDTASDLHKRYEKFQNAYK
QYLKDRNHYKALVDEFDDDITLLDQIPVFPSLLRASSDKSMVGSIIPGEPYDHDRSVSLL
EWISERGSNQSLWQVADSCYRILTQMDEEQMNKIITNAQGAIEGSKNTSMKEIRGVGDRL
SQLEQLLHEAKKVVQEQSDLANAFVQNQQRASNLKDSSILPNLCDSHRQQLIVMSKNYES
VVSIRKRCANAKGELSVNLHSRLKWIVFIQNKIAEAAQSIVINFESLRRLGKKLEVMEQL
HLAPSMFMTTAVEVVRRKAFSLEFSKQACELSTKFEKVYNEEINLREEFQSKLKKHFICR
MFPGLEDNPPSFATKKPKPFDEKLPDITLNDIEELRRKLPELASYLQLPEEKALDHLLNR
SYNDGFTEQDGLTRNSLQTMAQRLPSRNSHELMAMSVMNPLSFDNKKIPSHVLIHSRPSS
KVNLDNSDTDDTNEDIGKNHLKKLTLSLPSEQNKAINNKPQKHTAISDSSGVDPNSSSSA
PPSSSSEGGASLCFKTGASSISSSTPIHPISKLRSELNELKYDVKGFIHKFQTEAMHGLK
RELSLYVTSAFGPMSENVTRLKSELLYLNEKGGNELENLRIEKEEQLRESVRKMTLEHEL
EMDNLKVELNKIQNADNYQQDISNLSSKLSAKNKEVLNLKQVLNLLETERDSLLAEKDKI
VSILEAGFIQREKLSIKTREEELKKDYQEELERTRKEIYVDLQKDFSDREKHKLDHLETS
QKLIDAKKEEEFTLRISQEREKWKNEKVKEIQAEVDKTNMMAKKEIDVLRSRFKIMQASG
ALERSPSASESELSLELQKKRLKSILKASPCIYSNQSPRPELLEQIRSVMAKEYDNNLKA
ERNRWEQRLRQISAEHKSQLDDLKAEKQVNFNEVLNSVVEKKDRAIDKLTQEIEELKSRK
LKSDDEKRDLETKIEDLGCQNAKLESEINYNQRIGEDCSEDEDLTSLQMENTRLKELLSK
RMSDNYSCGKISVTSTDIGDCVMIVWSQETQQYIIYNEKGYYAFLHTDSIQSLGLSEEKR
FTTGIVVDGEYCVTRRSNNRFRLPTGTRFRRVKCKPMDIRRSNTN
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgttgtatatatttttggttgacaatggaagcatgctccaactggacatgaatcttgct
gtggagacagtgggaagtctgaaaggagtgttggaagcccaaacgcaaatcccagtggag
aagcagatccttttgataagtggaggagagtcttgtgatgaggagcaaaaagtgtgtaaa
tatactgcgggaacagatacgaacccaatttttctgttttccatgtcctccattgaagag
ggaggcggaggatgtcctcctctcatgccctcgaatcccaatcaggacatgaatagtgat
cgactgaaaaacaaagtggagtctgccctttccttgccggacgcctcatctactgtagcg
atacgggccacaatagcacaagagtttgtagaggcctcaagggagcaatctcgcttatgt
gaaaccctcattcatgaccaacatttacagcatcaaggatggtcagcagttgttgctaat
ttggaggacactgcctcggatctacacaaacgatacgaaaaatttcaaaatgcttataaa
caatatctcaaagatcgaaatcactacaaagcccttgttgatgaatttgatgatgacatt
actctacttgatcaaatccctgtttttccttctcttctacgtgcttcttccgacaagtcc
atggttggtagcattattcctggtgaaccctatgatcatgatcgctctgttagccttctc
gaatggatatccgagagaggctccaatcagtctctatggcaagtggcggatagctgctac
cgtattcttactcagatggatgaagaacaaatgaataaaataataactaatgctcagggt
gctattgaaggatccaagaatacatccatgaaagaaattagaggagttggtgatagattg
tcacaacttgagcagctactacatgaagctaaaaaagttgtgcaggaacagtcggattta
gccaacgcatttgtccaaaatcaacagagagcatcaaacttgaaggactcttctatttta
ccaaatctttgtgattcacatagacaacagctcatcgtaatgtccaagaactatgaatct
gttgtttcaataagaaagcgttgtgcgaatgctaagggtgagctctccgtcaatctacat
tctaggctcaagtggattgtttttatacaaaataaaattgctgaagctgctcaaagtatt
gtcattaattttgagagtttgcgaagactgggtaagaaattggaagtgatggagcagttg
catttggctccatctatgtttatgactacggctgttgaggtggtgaggcgaaaggctttt
tcattagaattttccaagcaagcatgtgaattgtcaaccaaatttgaaaaagtgtacaat
gaagaaataaatcttcgtgaagaatttcaatctaaactaaaaaaacactttatatgtcgt
atgttccctggattagaagataatcctccctcatttgcaaccaaaaaacccaagcctttc
gatgaaaaacttcctgatataacgttgaatgatattgaagagcttcgtcgaaagcttcca
gaacttgcatcttatcttcaacttccagaagaaaaagctcttgatcatttactaaatcgt
tcctacaacgatgggtttactgagcaagatggcctaactcgaaattcattgcaaacaatg
gctcaaagacttccttcaagaaattctcacgagcttatggctatgagtgttatgaatcca
ctttcatttgataataaaaaaattccaagtcacgtattgatacattcacgcccttcatca
aaagtcaatttagataattctgatactgatgatactaatgaagatatcggaaaaaatcat
ttgaaaaagttaactctgtccttgccatctgagcaaaataaagccattaataataaacca
caaaaacatactgctatttccgacagctctggtgtagatccaaactctagctcaagtgca
cctccatccagttcaagtgaaggaggcgctagtctttgtttcaaaactggcgcatcctcc
atatcttcttccactcctattcatcccatttctaaactaagatcagaattaaatgaattg
aaatatgatgtaaaaggctttattcataaatttcaaacagaagcgatgcacggattaaaa
agggagttatcgttatatgttacaagtgcatttgggccaatgagcgaaaatgtcactcgt
ttgaagtcagaattactgtatttaaatgaaaaaggtggaaacgaattggaaaatcttcga
attgaaaaagaagaacagttgagggagtcagtgaggaagatgactctcgagcatgaattg
gaaatggataacctcaaggttgaattgaacaaaattcaaaatgcagacaattatcagcag
gatatttcaaatttgtcgagtaagcttagtgccaaaaataaagaagtcttaaatttgaaa
caagtattaaatctgttagaaacagaacgcgattcacttttggcggaaaaagacaaaatt
gtgtcaatacttgaagcaggattcattcagagagaaaagttatcaattaaaacaagagaa
gaggaattgaaaaaagattaccaagaagaattagagcgaactcggaaagagatctatgtt
gatttacaaaaggattttagtgatagagaaaaacataagttggatcatcttgaaacctca
caaaaactaattgatgctaaaaaggaggaggagtttacattaagaatatctcaagaaagg
gaaaaatggaaaaatgaaaaggtcaaggaaattcaagcagaagtagataaaaccaatatg
atggcaaagaaggaaatagatgttttgaggtctaggttcaaaattatgcaagcatctgga
gcacttgaaagatcaccttctgcttcagaatctgaattgtctctcgagctacaaaaaaaa
agactgaagagtattctaaaagcttctccatgtatatattcaaatcagagtccaaggcca
gagcttcttgagcagatacgttctgtaatggctaaagaatacgataataacttaaaagca
gagcgcaatagatgggaacagagacttagacaaatatctgctgaacataaaagtcaatta
gatgacctcaaagctgaaaaacaagtcaacttcaatgaggttttaaattctgttgttgaa
aaaaaggatagagcaattgacaagctcactcaggaaatcgaagaacttaaatcacgaaaa
ctcaaatctgatgatgaaaagagggatcttgaaacaaaaattgaggacttgggatgtcaa
aatgcaaaattagagtcagaaatcaattataatcagcgaataggagaagattgtagtgaa
gatgaggatctcactagtcttcaaatggaaaatacacggctaaaggagctgttaagcaag
agaatgagcgacaattactcatgtggaaaaataagtgtcacatctacagacatcggagat
tgtgtaatgattgtttggagtcaagaaactcagcagtatatcatttacaacgaaaaaggt
tattatgcttttcttcatacagatagtattcaaagccttggtttaagcgaagaaaagcgc
tttaccacaggaattgttgtggatggagaatactgcgtcactcgaagatcgaataacaga
ttcaggctcccaacaggtacacgattccgtagagtgaaatgcaaacccatggatattcgt
aggtctaataccaattaa
DBGET
integrated database retrieval system
