Lepeophtheirus salmonis (salmon louse): 121119044
Help
Entry
121119044 CDS
T08214
Symbol
Bap170
Name
(RefSeq) SWI/SNF nucleosome remodeling complex component
KO
K11765
AT-rich interactive domain-containing protein 2
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121119044 (Bap170)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsm03000
]
121119044 (Bap170)
03021 Transcription machinery [BR:
lsm03021
]
121119044 (Bap170)
03036 Chromosome and associated proteins [BR:
lsm03036
]
121119044 (Bap170)
Transcription factors [BR:
lsm03000
]
Eukaryotic type
Helix-turn-helix
ARID
121119044 (Bap170)
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121119044 (Bap170)
Chromosome and associated proteins [BR:
lsm03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
121119044 (Bap170)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARID
RFX_DNA_binding
Motif
Other DBs
NCBI-GeneID:
121119044
NCBI-ProteinID:
XP_040569596
LinkDB
All DBs
Position
5:21974636..21982660
Genome browser
AA seq
1469 aa
AA seq
DB search
MAQLLNKSPELYNQEKKAFLKELKHFHDQRGTPFKRIPNINGKEIDLYHLYWVVTAHGGW
EKVNSRNAWEDFLETFELGQATTNAALGLKQIYLRYLDSYEKYHFLGEDEDREDDWYNDE
EESRSRRQKAQKLHASVPLSYNHGQHNVNENLRSYYGFSTNVYRRTDYDRLTLSLSSPLP
NEQDFAINTCTLLSNEGKHTLKLAKCERLLDHLLAHAGVYNDESYRVYMENQYLESRNYD
LYSFWKDVCHLESVRQLILRCDDQKSSSFSSSRRRRRIHDDKSDSSSDDNSEGIMSLPSP
KQRLNAVKRKAKSEIEDARPGSPSIFAIGRLGGTQELTGQRVRQIATIIRNLSFEEENAQ
IIAKSIPCLRFCLLCASSKWSNLNQMGFDILSNIAGDMILDDSFCENTHLTEILLSTIIS
GISSSDRFQVISSLDVLNKLCLQSRNEHYLENFLGHGVYSQLIAYLSLHDIHLLISTLEC
LYSLSSLGEISCNSIARISGAVDSLVSLTTAEAQSYGPKACVLMRVVEYVPGGAPLTIKG
QSPCVKPSVKTPSTQVTQLSNVRPQQIIRSQHPHTIQQATQMRTVAPISQIGTTYQQKPT
QVVQLAQGASGVVKIPIHSLPVVRHTMTPQQTRVTQIAMNAPVAQAVTQQQKQQIPAVIS
VQSPNISVPIRQAFSQPQQPQLQITHQQQQPQIQLTQPHLQITQQPQLQITQQQPQLQVT
QQPSPLQVTPQQLSQIQVTQQQPQLQVVQQQPQLHVVQQQHQLQVVQQQPQLQITQQQTQ
VQISNSQEAQQTLRSQQVSLRINNDESNRQLCLSWLRATYETCPISHIEQFIMYKQYLAS
MHKMGREDVISDQHHVVCVRTLFGGDVGPNSKLLPNGKTERHFEGVKVRAVPQPLRLPAV
NNQVETPQKPPQQSVVLLSGNNNSRCTPTPPPVIQTSQTTVVPVPPQSPILTNLLHRKSP
DPKNSQVYSRNNETNENLDSIVPKENKLLKVNSDDHKPQGNGMLANLLEQKKDVDKITVN
GAIGGVVTEIIQTVNGIEYDEFQSRKRSTVAIEQPPAKKIILTNGGGMNLDGLGEKEEVI
TQQVGTGNIVSSSVGVQQQSILMNSSGQIIVGQTANVKTSAPQQQQLIMQQQQRILPPGT
RIVSATSSEGASTVQQPILMKTTSPPAITNGGTPTTNVGGVGQNQKTIIILPYSGVLPAQ
QNVNTTINTGSNSVQNVNGGGIPSTANGAHTIMVSSQTPSNIISGVSSNGPPVVSPSSVP
SAPTPPPQMQEVVLKPNPACPFLCEWSGCMKAFKTPKEVENHAIKAHCPIEMDDIPCLWS
RCDGMKRKRFSLMTHIQDRHCHPQLMKLMAVRRVQLAQNGKSDVPLPPAPPPHPGYAPNA
AYHAIKRHALEFVSPKEMAMRDEKEGPVTKSIRLTSSLILKNLVIYSALGKSKLRAYESH
LSTVALSNVESSRTMSQILYDMSEKDQKT
NT seq
4410 nt
NT seq
+upstream
nt +downstream
nt
atggctcaactactcaacaagtcaccggagctctacaaccaagaaaaaaaggcttttcta
aaggagctcaaacatttccacgatcaaagaggtacacctttcaaaagaattcccaatata
aatggaaaagagattgatttataccatctgtattgggttgttacagctcatggtggttgg
gaaaaggtaaatagtcgtaatgcatgggaagattttttggagacttttgaattaggacaa
gctactacaaatgctgccttgggcttgaagcaaatttatttgcgatatttagactcatat
gaaaaatatcactttcttggagaagatgaagacagggaagacgattggtataatgatgag
gaagaatcaaggtctaggagacaaaaagcacagaaacttcatgcttctgttcccttgtcg
tataatcacggacaacataatgttaatgaaaaccttcgcagttattatggtttttcaact
aatgtataccgacgtacggactatgatcgattaactttgtctttaagttctcctttacca
aatgaacaagactttgctataaatacatgtaccttattgtccaatgaaggaaagcacaca
ttgaaattggctaaatgtgagagacttttggatcatttgttagctcatgctggtgtttat
aatgacgaaagttatcgtgtttacatggaaaatcagtaccttgaatctcgcaattacgat
ttgtattcattttggaaagatgtttgccatttggaatcagtgcgacaattaatacttcgt
tgtgatgatcaaaagtcttcttctttttcttcatcaagacgaagaagacgtattcatgat
gataaatctgatagttcttcagatgataacagtgaaggtattatgtccttaccaagtccg
aagcagcgattgaatgctgttaagcgaaaggcaaaaagtgaaatcgaagatgctaggccg
gggtctccatctatattcgctattggaagactcgggggtactcaagaactcactggtcaa
agggtccgtcaaattgccacaataattcgaaaccttagttttgaagaggaaaatgcgcaa
ataatagctaaaagcatcccttgtttgagattctgtcttctttgtgcaagttcgaaatgg
agcaacttgaatcaaatgggttttgatattttaagtaatattgctggtgacatgattctt
gatgattctttttgtgaaaatacccatttgacagaaattctactttcgacaatcatatct
ggaatttcttcatctgaccgtttccaagtaatttcctctctcgatgttttaaacaaactc
tgcttgcaatcaagaaatgaacactacttagaaaactttctgggtcatggagtttactct
caattgattgcctatctttcccttcacgatattcatttacttatatctacattggaatgt
ttgtattcgctctcttctcttggagaaatatcatgcaattctattgctcgcatttctggt
gcagttgattccttagtaagtttaaccactgctgaggctcagagttatggtcctaaagct
tgtgttttaatgcgtgttgtggaatatgttcctggaggagctcctttgacaattaaagga
cagtcgccttgcgttaaaccttctgttaaaacacctagtacacaagtcactcaactcagt
aatgttagaccacaacaaatcatacgttcccaacatccacatactattcaacaagctaca
caaatgagaactgttgctcctatttctcaaataggaacaacttatcagcaaaaacctact
caagtagtacaattggcacagggagcctctggtgttgtaaaaattccaattcattcattg
ccagtagtgcggcatacaatgacacctcaacagactcgtgtaacccagatagcaatgaat
gcccccgttgctcaagctgttacccaacaacaaaaacagcaaattcctgcagttatatca
gtgcaaagtcccaatatttcggtgcctattcggcaagccttttctcagccgcaacaacct
caattgcaaataacccatcagcagcagcaacctcaaattcaattaacgcaaccacatcta
caaataacccagcaaccccaattgcaaataacccaacaacagccacaacttcaagttaca
caacagccttccccattacaagtaactcctcaacaactatcacagatacaagtgacgcag
caacaaccacagctgcaagtagttcaacaacaacctcagctgcatgtagttcaacaacaa
catcagctgcaagtagttcaacaacaacctcaattgcaaataacccaacaacagacgcaa
gtacaaatctctaattcgcaggaggcacaacaaactctgagatctcaacaagtatctctt
agaatcaataatgatgaatcaaatagacaattatgcttatcttggctaagagcaacatat
gaaacatgtccgatttcacacattgaacaatttattatgtataagcagtatttagcttct
atgcacaaaatgggcagagaagatgtcatttcggaccaacatcatgttgtttgtgtcagg
actctctttggtggagacgttgggcctaattccaaattattaccaaacggaaaaacagag
cgacatttcgaaggagtaaaagttcgtgcagtgcctcagcccttacgcttgcctgctgta
aataaccaagtggagacaccacagaagcctccacaacaatcggttgtgttattgtcagga
aataataattccagatgtactccaactcctccgcctgtaatccaaacatcacaaactact
gttgttcctgtccctccacaatctccaatactgacaaatcttctacatcgaaaaagtccc
gacccgaagaactcacaggtatattctcgaaataacgagaccaatgaaaatcttgatagc
atcgttcctaaagagaataagcttttaaaagtcaattctgatgatcataaacctcaagga
aatggtatgctagccaatttacttgaacaaaagaaagatgtagacaaaattactgtgaat
ggagctataggaggagtagttactgagattatacaaacagtgaatggaatagaatatgat
gaattccaatcacgtaaacgatcaactgttgccattgaacaaccaccagctaagaaaatt
attttaactaacggtggtggaatgaacttagatggtttaggtgagaaggaagaagtcatt
actcagcaagtaggaactggaaatattgtgtcctcttccgttggcgtgcaacaacaatca
attttgatgaattcatctgggcaaataatagttggtcagacagcaaacgtcaaaacatcc
gcaccccaacaacagcaactaataatgcaacaacaacaacgtattcttcctcctggaacg
agaattgtttctgcaacttcttcagaaggagcatcaactgtgcaacaacctatattaatg
aaaacgacaagccctccagccattactaatgggggtactcctacgactaacgttggaggg
gtgggacaaaatcaaaagactattataatattgccttactctggagtacttccagctcaa
caaaatgtgaatactacaattaatactggtagtaattctgtccaaaatgttaatggtggg
ggaataccttcaactgcaaacggtgcacatactattatggtctcttcgcagaccccatca
aatatcatttcaggagtatcttctaatgggcctccagttgtatcgccctcttccgtccct
tctgcccctactcctccacctcagatgcaagaagttgtgctcaaaccaaatcctgcatgt
ccatttttatgtgaatggagtggatgcatgaaagctttcaaaacccctaaagaagttgag
aatcacgccattaaagcacattgtcctatagagatggacgacattccttgtttatggagt
agatgtgacggcatgaaaaggaagagattttcacttatgacgcatattcaggatcggcat
tgccatccacagttaatgaaattaatggctgttcgtcgagtacagttggctcaaaacgga
aaatctgacgtccctcttccaccagctccccctcctcaccccggttatgcacctaatgcg
gcgtaccatgccatcaagcgacatgctcttgaatttgtcagtcccaaggaaatggcgatg
agagatgaaaaagaaggtccagttacaaaaagtataagattgacttcttctcttatattg
aaaaacctagtcatttattcagccttgggaaaatcaaaattacgggcatatgagtcgcat
ctatctaccgttgcgttaagtaatgtagaatcatctcgaactatgagtcagatactctat
gatatgtctgaaaaagatcaaaaaacgtaa
DBGET
integrated database retrieval system
