Lepeophtheirus salmonis (salmon louse): 121119081
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Entry
121119081 CDS
T08214
Symbol
RfC3
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03030
DNA replication
lsm03410
Base excision repair
lsm03420
Nucleotide excision repair
lsm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121119081 (RfC3)
03410 Base excision repair
121119081 (RfC3)
03420 Nucleotide excision repair
121119081 (RfC3)
03430 Mismatch repair
121119081 (RfC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsm03032
]
121119081 (RfC3)
03036 Chromosome and associated proteins [BR:
lsm03036
]
121119081 (RfC3)
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121119081 (RfC3)
DNA replication proteins [BR:
lsm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121119081 (RfC3)
DNA Replication Termination Factors
ELG1-RFC complex
121119081 (RfC3)
Chromosome and associated proteins [BR:
lsm03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121119081 (RfC3)
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121119081 (RfC3)
Check point factors
HRAD17(Rad24)-RFC complex
121119081 (RfC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_22
Rad17
AAA_16
AAA_30
DEAD
DUF815
AAA_11
RuvB_N
AAA_24
AAA_assoc_2
ResIII
AAA_5
AAA_19
AAA_2
AAA_7
SLFN-g3_helicase
TIP49
Thioredoxin_6
Rad26-like_N
AAA_25
Motif
Other DBs
NCBI-GeneID:
121119081
NCBI-ProteinID:
XP_040569634
LinkDB
All DBs
Position
5:complement(56833846..56835214)
Genome browser
AA seq
342 aa
AA seq
DB search
MVVSTDKPLNLPWVEKYRPKNLSELVSHEDIIGTIRRFVKEKRTPHLLFYGPPGTGKTSA
ILAAAREIYSEGGMNSAVLELNASDDRGIDVVRGRILNFASTKMVNFSGTNVPFKLIILD
EADAMTQDAQNALRRIIEKFTENVRFCLIGNYLSKIIPALQSRCTRFRFAPLQSEQIIPR
LRDIVEKESLELTPDGEKALLALAHGDMRRILNILQSCSMAFPVVNEANIYACTGHPLPS
DITKALESLLNDKLSESYHKIQNELQTNKGLSLIDILTELHLLVHRLEIPNKVKVYLLIK
MADAEHRMLSGASEKMQLGSIVGAFRIAREMIANETDAQLVA
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggttgtatccacggataagcctctaaatcttccatgggtggagaagtataggcccaaa
aatctctcagagttagtatcccatgaagatattattggaacaattcgtcgtttcgtaaag
gagaagagaactccacatttactcttttatggtcctcctggtacaggtaagacttctgca
atccttgccgctgccagagaaatttacagtgagggtgggatgaattcggccgtcctagag
ttaaacgcaagtgatgatcgaggtattgatgttgttagaggacgtattcttaattttgct
tcgactaaaatggtcaacttcagtggtacgaatgtgccgttcaaacttataattttagac
gaggctgatgcgatgacacaggatgctcaaaatgccctacggcgtattattgaaaagttc
acagagaatgttcgcttttgtctcattggtaactatttgtctaaaatcattcccgctctc
caaagtagatgtacacgttttcgattcgctcctttacagtctgaacaaatcattcctcgt
ctaagggacatagttgaaaaagagtccttagaactaactcctgatggagaaaaggcactt
ttggctcttgctcatggggacatgcgtagaatattgaatattcttcagagttgttctatg
gcgttccctgttgttaatgaagctaacatttatgcttgtactgggcatcccctcccttcc
gatattacgaaagcactcgagtctcttctcaatgacaaactctcagaatcctaccataaa
atacaaaatgagcttcaaactaataaaggactctctttgattgatattcttactgagtta
catctcttagttcatagattggaaatacccaataaagtgaaggtatacctgttaattaaa
atggcggatgcagaacacagaatgcttagtggtgctagtgagaaaatgcaattgggatcc
attgttggtgcatttcgaattgccagagaaatgatagctaatgaaactgacgcccaattg
gtggcctaa
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