Lepeophtheirus salmonis (salmon louse): 121119114
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Entry
121119114 CDS
T08214
Symbol
Rrp4
Name
(RefSeq) exosome complex component RRP4
KO
K03679
exosome complex component RRP4
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121119114 (Rrp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121119114 (Rrp4)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121119114 (Rrp4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
121119114 (Rrp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
121119114
NCBI-ProteinID:
XP_040569684
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Position
5:complement(28537389..28538700)
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AA seq
309 aa
AA seq
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MDISLANEWEKPPEDVDEATTFVTPGDIITRESGYMRGHGTYASDEGNEEKECLIASVGG
VVKRVNKLIRVLPLRSTYQGEIGDVLVGRIVEVQQKRWKVEVNSRLDAILHLSSVNLPGG
ELRRRSSEDELSMRTYLREGDLISAEVQTLYKDGSMSIHTRSLKYGKLEGGTVIKVSPSL
IKRQKTHFHTFPGGVSMILGLNGFIWLSIKSMISISEEDDDYEKQEYENGSNSFDDSDLG
LIESNPRLAIARLRNVVLALAANGVQLWDTSIIYGFKASENYDPKSLLKRDVMYDVARKT
QLRLESDNH
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggatattagtttagccaatgaatgggagaaacctccagaagatgtggatgaagcgact
accttcgtgactcctggagatattataaccagagaatcgggttacatgagaggacatgga
acgtacgcatcagatgaaggaaacgaggagaaggaatgcttgattgcatctgttggagga
gttgtcaaacgagtcaataaattaatacgcgtacttccactgagaagtacctatcaaggt
gaaatcggagatgttctcgtgggtagaatcgttgaggttcaacaaaaaagatggaaagtg
gaggtaaattcccgtcttgatgctattcttcacctttcatctgtaaatctccctgggggt
gagctacgtcgaagatcctctgaggatgaattatccatgcggacatatttgagggaaggg
gatctcatctctgcagaagtacaaaccctttataaggatggttcaatgtcaattcacacg
cgatccctcaaatatgggaaattggaaggtggaacagttatcaaagtctccccttcacta
ataaagcgacaaaagacccatttccacacgttccctggaggtgttagcatgatacttggt
ctaaacggattcatatggctgagcatcaaatcaatgatctcaatttctgaagaagatgat
gattacgaaaaacaagaatatgaaaatggcagtaattcttttgatgactcagatttggga
ctcatagaatcaaaccctcgtttagccattgctcgacttagaaacgtcgttctcgcactt
gctgcaaatggtgttcagctttgggatacttctattatatacggattcaaggcttcagag
aactacgacccaaaaagtttgcttaaaagagatgttatgtatgacgtggctaggaaaaca
caattgagactggagtctgacaatcattaa
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