Lepeophtheirus salmonis (salmon louse): 121119440
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Entry
121119440 CDS
T08214
Name
(RefSeq) LOW QUALITY PROTEIN: aprataxin-like
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121119440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121119440
Enzymes [BR:
lsm01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
121119440
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
121119440
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
121119440
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
121119440
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
121119440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
zf-C2HE
HIT
FHA_2
CSS_CxxC
YDR124W_N
FHA
Transglut_N
Motif
Other DBs
NCBI-GeneID:
121119440
NCBI-ProteinID:
XP_040570035
LinkDB
All DBs
Position
6:complement(42654677..42663414)
Genome browser
AA seq
302 aa
AA seq
DB search
MMILKSTSRNYPDIMLPKIGESIVCGRSRESKLKDTKISKQHIRIIVIDLTRIEILQLGS
NNSSLDDDRLILRRGHRSLLNVNSTFKFLSGTDYEYKLTMIKNDDKKSCSENTKKSSLSN
NSKKIEKHWSLGLISSMSNPSNQLYKDDSMVIIEDKFPKARHHFLALPLEKITTLKDLSE
CFIPLLKHLQSKSKKFIDDNYPDIAFKLGFHAIPSMTQIHCHIISQDFDSPCLKNKKHWN
SFNTPFFIEISEFISLLDSSCQHVSIDEKNTCXYLKSELSCHKCTYKPKNMPDLKQHLAI
HN
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atgatgatcctaaagagtacatctcgtaattatcctgatatcatgttaccaaagataggc
gaatctattgtatgtggcaggtcccgagaatcaaagctaaaagatacaaaaatatccaag
cagcacatcaggataatagttatagacttaacacgaatagagattctccaattggggtca
aataactcctctctcgatgatgatagattgatactaagaagaggacatcggtcattactc
aatgtgaattcaacttttaaattcctatcaggaacggattatgagtacaaattaacgatg
atcaaaaatgatgataagaaatcatgttcagaaaacacgaaaaaatctagtttgtcgaat
aattccaagaaaatagagaaacattggtcattaggcttgatttcttctatgtcaaatcca
tctaaccagctgtataaggatgattcaatggttattatcgaagataaatttcccaaggca
aggcatcatttcttagcacttccccttgaaaaaattacaactctaaaagatttatctgaa
tgtttcattccattactgaaacatttacagtcaaagtcgaagaaatttattgatgacaat
taccctgatattgcgtttaaattaggttttcatgccattccaagtatgacacagattcat
tgtcatatcattagccaggattttgattcgccatgtttgaaaaacaaaaaacattggaat
tcatttaatactccttttttcattgaaatatccgagttcatttcattgcttgactcttct
tgtcaacatgtcagtattgatgagaaaaatacttgtntatacttaaaatcagagctctca
tgtcataaatgtacctacaagccaaaaaatatgcctgatctcaagcaacatctagcaata
cataattaa
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