Lepeophtheirus salmonis (salmon louse): 121119805
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Entry
121119805 CDS
T08214
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121119805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121119805
03036 Chromosome and associated proteins [BR:
lsm03036
]
121119805
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121119805
Coactivators
SAGA/TFTC/STAGA complex
121119805
Chromosome and associated proteins [BR:
lsm03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121119805
STAGA complex
121119805
TFTC complex
121119805
SAGA complex
121119805
SLIK complex
121119805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_HPS5
WD_LRWD1
WD40_RFWD3
Beta-prop_VPS8
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_Nup120_160
Beta-prop_NWD2_C
Beta-prop_ELP1_1st
Cytochrom_D1
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
121119805
NCBI-ProteinID:
XP_071745280
LinkDB
All DBs
Position
6:21535110..21540094
Genome browser
AA seq
670 aa
AA seq
DB search
VEIPGIEMDLDSVLSFLRKHNLNKTEDLLKDEFKSDNKSIPKSQDSNHPDATTDNHDDVK
DQEESDVLRSYKSDEKNPLMYSHVYRELESFVERSVDLYKPELSQILYPVFVHMYLELVY
NGHEGAAMEFIKTFGSKQESFYEEDVQKLSYMTKPRHMRGSELIENFQTAQFTVRMSRDT
YTQLRKKFMSERKHSILWNIIQEHLYLDVYEGIARNKKQIAATSGGMVGEANRQANRQKV
YYGLLREPDLSAFTNTILMNEPDEEDDGEGDKPKKKKLKRDAHLKRQKNDPNAPVASRMP
FPDLRDTDKAEKARALKESLKRITVGPECLPSVCFYSVLNSASSLTAIEITDDSSILGAG
FSDAAIKVWSLLPSKLKVLKSADELGDINRDADDVLHRMMEDNSGVVSRTLYGHSGPVYG
ISFSPDKSMLLSCSEDGTIRLWSLQTWTCLVCYRGHMYAVWHVKFSPQGYYFASAGHDKT
VMLWSTEQHHSLRIFAGHFSDVDCIAFHPNCNYIASGSSDRSVRVWDCVSGNCVRLMTGH
KTAVSTLAFSPDGRFLASGGRDSRVLFWDIAHGHLLADLSNHSQTVTALAFSRDGNILAS
SSTDFGLAMWDFQKLINESSLEDVNVAHNPDVRTDSKNLLVTSYSTKTSPILHLHFTRRN
LLLSVGPYCG
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
gtggagatcccgggcatcgaaatggatttggactctgttctttcctttcttcgcaaacac
aacttgaacaaaaccgaagatcttcttaaagatgagttcaagtctgacaacaaatccatc
ccaaagtctcaagattccaatcatccagacgccacaactgataaccatgacgatgtcaag
gatcaggaagagtcggatgtgctccgttcctataaaagtgacgagaaaaatcctctcatg
tattcccatgtgtatagggagttggaatcctttgtagaacgctccgtggatctctacaaa
ccagagttgtctcaaattctctatccagtctttgttcacatgtatttggaactcgtgtac
aatggacatgaaggagctgcgatggagttcattaaaacgtttgggagcaaacaagagtca
ttttatgaggaggatgttcaaaaactatcttatatgacaaaacctcgccatatgagagga
tcggagctcattgaaaactttcaaacggctcaattcactgtgagaatgtccagagatact
tacacacaactcaggaaaaaattcatgtctgaaaggaagcatagcatactatggaatatc
atacaagaacatttgtatctggatgtatatgagggaattgctcgtaataaaaaacaaatt
gcagccacgtcaggtggaatggtgggtgaagctaatcggcaggccaatcgacaaaaagta
tactatggtcttcttcgagaaccagacctttctgcctttacgaatacaatattaatgaac
gaaccagatgaagaggacgatggagaaggtgacaagccaaagaaaaaaaagttgaaaagg
gacgcccatctcaagaggcagaaaaatgatcccaatgcacctgttgcctctcgtatgcct
tttcctgaccttagggatacagacaaggcggaaaaagcaagggctctaaaagaaagctta
aagagaatcactgtgggaccagaatgtcttccttccgtttgtttttattctgttcttaat
tcagcctcttcattgactgcaattgagatcactgacgattcaagtattttgggagctggt
ttctcagatgcagcgattaaagtatggtctttgctaccttctaagttaaaagtcctaaaa
tctgccgatgaacttggtgacatcaatcgagatgctgatgacgtattgcatagaatgatg
gaagacaattctggagttgtctcaaggacgttatatggccattctggtcctgtctatggt
atttcttttagtcccgacaaatcaatgttactttcttgttctgaagacggaaccattcgt
ctttggagtttgcagacgtggacatgtttagtttgttacagaggtcatatgtatgcagtt
tggcatgtcaagttctccccacaaggatattattttgcatctgctggacatgataaaact
gttatgctgtggtctacagagcaacatcatagtttacgaatttttgctgggcacttctct
gatgtagactgtattgcattccatcctaattgtaattatatagcatctggttcaagtgac
cgaagtgttagagtatgggactgcgtatctggaaattgtgttcgcctcatgacgggacat
aaaactgcagtgtctactctcgcattttcgcctgatggacgattccttgcatctgggggt
cgtgactcacgtgtacttttttgggatatcgctcacggccatctactcgcagacttgtcc
aatcactctcaaacagttactgctcttgctttctcacgtgatggaaacatattggcttcc
tcttccacagactttggcctagccatgtgggactttcaaaaacttataaatgaatctagc
ttagaagatgtgaatgttgcacataatccggatgtgcgaacggactctaaaaatctatta
gttacctcatactccacgaaaacctcacctatacttcatttacacttcactcgtcgcaat
ctgcttttgtcagtcggaccatactgtggataa
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