Lepeophtheirus salmonis (salmon louse): 121119847
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Entry
121119847 CDS
T08214
Name
(RefSeq) TATA element modulatory factor isoform X1
KO
K20286
TATA element modulatory factor
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsm04131
]
121119847
Membrane trafficking [BR:
lsm04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
121119847
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
Mce4_CUP1
Motif
Other DBs
NCBI-GeneID:
121119847
NCBI-ProteinID:
XP_040570586
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Position
6:55341672..55345714
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AA seq
1037 aa
AA seq
DB search
MSWLQGSNFASLAKNAVKEAQKKLDSALDIQEHEFGLDQSTWGSFTGSFFEAKDYLKNPS
TEKEDSESLIAEEPGVVLAEPKSSSDLLTSVTTVQPLSNTSSLLKISENVENDEEDDDIA
STDSAFRDSLQSSTTNITDTLISSTTSTSRSGFSVISSTIRKNEELDIMDNSVEGMENGE
NRRDSTGFEECDLNDSSNNEEEEDNKNNSIICCDPVIEVSEFQNTSAIMTSCGPELLIHE
AMIDQSEKRSEAGSSSSKSYEVVKAINSGHTSGDELETHTSSSDIEIISSPPPSTASSIS
SHHRCISPSCKKDKQYCDHKETVITDDETIKEAILDNQLDYLQKVSVSNATDEKHTIDTL
ASIEISHTRTGSELSISGSDETSQTEIDRLLKKIKDMNEILDAREYKIVELSRCNIELQE
KSTDLSSQIKEAMKINNKLTESTLTAEEFTTRLSNMEKKLQKTLAERDSLKDEVKAMKQE
FVKRKREEEWKEMIEERDSTISDLRCEGESLSKEVGKYSELVKKLRSKDKNNDKEIKALK
SELETKNTDFDRLKKSSKTKDENESNHILAIQNLSSLNSKLEKEKNKLKLSVDEVTEKSD
NLRSSLENSYKEIAELKRQMSEKEDAAHEVALSKEMTAKIALQEQLRDLQEKSILEKETL
YTRMDELRSSLNSAERGASHREEQLCRQRDDLQCRLEESENRLAELSSTVSAATLPLQRQ
IESLQTSLRETQSSSDKLEQTLNERLQYMTIQLGAAQERDRSVSEQYMNLSAKYSSLEVK
YQELIKIEEYENNELTDLKQRFKIVEESKKRELSSILSKNSSLSQELSEAIKKCQLHEVV
FQNEKIKLETKINHLEGLYQDRESKMKEMQQNLDKNNLERYSCRSSPSQFSSISEQWGDE
SIFDNSRMRNNNSFYDSVRVGGSSLASLVENYQFSLRQRDGEVSQLQAEISSLEKIRDSM
TMELSNLSIKVDKLNEVEDEVKSLTQLYKETEEKYQTMLTMYGEKVEETEELKLDLQDVK
EMYKVQIQELLQSQRNS
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgagttggcttcaaggatctaattttgctagtttagcaaaaaacgccgtcaaagaagct
caaaagaaactcgactctgctttggatattcaagaacatgagtttggtttggatcaatcc
acatggggctccttcacaggctccttctttgaagctaaagattacttaaaaaacccatca
acagaaaaggaagacagcgaatctctgatcgctgaagagcctggagttgttttagctgaa
cccaagagttcttcggacttgttaacatctgtaacaacagttcaacccttgtctaatact
tcatctttactgaaaatctcggaaaatgtagaaaatgacgaggaagatgacgatattgca
tcaacggactccgcatttcgagattctcttcaatcctcaacgacaaatattactgacact
ttaatatcctccacaacatccacatcaaggagtggattctctgtaataagctctactata
cgtaaaaatgaagaacttgatatcatggataattctgttgaggggatggaaaatggggag
aatagaagggatagtacgggcttcgaggaatgcgatttaaacgactcctccaataatgaa
gaagaggaagataataaaaacaattccattatctgttgcgatcctgtaatagaagtctcc
gaattccaaaatactagtgccatcatgacctcttgtggcccagaactcctcatacatgaa
gccatgatcgatcaaagtgaaaaacgaagtgaggctgggagttcaagctccaagtcatat
gaagttgtcaaagcaataaatagtggtcatacatctggagatgaattggaaacacataca
agttcctcagatattgaaattatttcaagtcctcctcctagtactgcaagctccatctca
tctcatcatcgttgtatatctcctagctgcaaaaaagacaagcaatactgcgatcataaa
gaaacagttattactgatgatgaaacaattaaggaagccattttggataatcaattagat
tatcttcaaaaagtttcagtttcgaatgctacagatgaaaagcacacaatagatacgctg
gcttctatcgagattagccatacacgtacaggttccgagttgtccatatcaggatctgat
gaaacgtcccaaacagaaattgatcgtttgttaaagaaaataaaggatatgaatgaaatt
ttggatgctagagaatataaaattgttgagttgagtcgatgtaatattgagcttcaagaa
aaaagtacggatttgtcaagtcaaataaaagaagcaatgaagattaataataaattaaca
gaaagtacacttactgctgaagaatttactactaggctttctaatatggagaaaaaactc
caaaaaacccttgctgaacgagatagtttaaaagatgaggtcaaagctatgaaacaagag
tttgtaaaacgtaaacgtgaggaagaatggaaggaaatgatcgaggaaagggattcgact
atttccgatctccgatgtgaaggtgaaagtctatccaaagaagtaggaaaatattcggag
cttgtgaaaaaacttcgctcgaaagataaaaataacgataaggaaattaaagcactcaag
tccgagcttgaaacaaagaatactgattttgatcgtctcaaaaagtcatctaagacaaag
gatgaaaatgagtctaatcacattcttgccatacaaaatctatcctccttaaattccaaa
ttagaaaaagaaaaaaataaattgaaattatcagtggatgaagtcacagaaaaaagtgat
aatctccggagtagtcttgagaattcgtataaagaaattgctgagctgaagagacaaatg
tcagaaaaagaagatgcagctcatgaagttgccctttctaaagaaatgacagccaaaatt
gctctacaggaacaattacgggatcttcaggagaaatccattttagagaaagaaacgttg
tacactcgaatggatgaattacgaagtagcttaaactcagcagagagaggagcttcacat
cgtgaggaacaattgtgtcgtcaacgagatgacttacagtgtagactagaggaaagtgaa
aatcgtcttgcagagctctcaagcactgtgagtgcagccacgttacctcttcagagacaa
attgagtccctacagacctcccttcgagaaactcagtcctctagtgacaaattagaacaa
actcttaatgagcgactccaatatatgaccattcaattaggagctgcacaggagcgtgat
agaagtgtgtcggagcagtatatgaatttatcagcgaagtattccagtttagaggtaaaa
tatcaagagctaatcaagatagaagaatatgagaataatgaactaactgatctcaaacaa
agatttaaaattgttgaggagtctaaaaagagagagttgtcttccatattgagcaaaaat
tcttcactatcccaagaactctccgaggctataaaaaaatgccagctacatgaagtagtt
tttcaaaatgaaaaaatcaaattagagaccaaaataaatcatttagagggattataccag
gacagggaatctaagatgaaagaaatgcaacaaaatctagataagaataatttggaacga
tattcctgtcgtagctctccttcccaattttcatccatctctgagcaatggggggatgag
tcaattttcgacaattctcgaatgagaaacaataattctttttatgattcggtccgtgtc
ggtggaagttcgttagcctcccttgtagaaaattatcagttctctctgaggcaaagagat
ggagaagtgtcgcagctccaagctgaaatatccagtttggaaaagattagagactcaatg
acaatggagctaagtaatttatctattaaagtcgataaactgaatgaagttgaggatgaa
gtcaagagcttaactcagctttacaaggagacggaagagaaataccaaacaatgctcacg
atgtatggagaaaaagttgaagagacggaagaacttaaattagatttgcaagatgtgaaa
gaaatgtataaggttcaaattcaagaactcttacagtctcaacggaatagctaa
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