Lepeophtheirus salmonis (salmon louse): 121120330
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Entry
121120330 CDS
T08214
Symbol
Clp
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121120330 (Clp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121120330 (Clp)
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121120330 (Clp)
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121120330 (Clp)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121120330 (Clp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf-CCHC
zf-CCCH_3
Torus
zf_CCCH_4
zf-CCCH_4
zf-CCHC_4
Nab2-like_zf-CCCH_
zf-C2H2_10
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
121120330
NCBI-ProteinID:
XP_040571113
UniProt:
A0A0K2TKA6
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All DBs
Position
6:27946155..27947429
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AA seq
293 aa
AA seq
DB search
MDLLVAPVDHIRFKMENDLENQVGSCPLPFPGMDKSGSAVCEFYVKATCSKGTCCPFRHV
RGDKTIVCKHWLRGLCKKGDTCEFLHEYDMSKMPECYFYSRFNACHNKECPFLHIDPESK
IRDCPWYDRGFCRHGPSCRHRHVRRILCMNYLAGFCPVGPSCSDAHPRFELPAPQETDPR
LGKKIVITCHYCGEAGHKVSHCAKMPQELRDQHALAGGGNDMYMNKSNYGFANNRSEELP
ANNTKKYKNLDEIICYKCGEVGHFANKCSKGHLAFLSSNNSQIQQRIKEQQQR
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggatcttttagtggctcctgtggaccatattcgcttcaagatggagaatgatctcgag
aaccaagtgggttcttgcccacttccctttcccgggatggataagtccggctccgccgtg
tgtgagttctacgtgaaagcgacttgctccaaagggacgtgttgccccttccgtcacgtt
cgtggagacaaaacaatagtgtgcaagcattggcttcgaggtctctgtaaaaagggggat
acttgcgagttccttcatgagtacgatatgagtaaaatgccggagtgttacttttactcc
cgattcaacgcatgtcacaacaaggaatgtcccttcctccacatcgatcctgaaagtaaa
attcgtgactgcccatggtatgatcgtggtttctgcaggcatgggccctcatgtcgtcat
cgacatgttcgacgaatactatgtatgaattatttggcgggtttttgccctgtaggtcca
agttgtagtgatgctcatccaagattcgagctgcccgcacctcaagaaacagatccaaga
ttaggtaaaaaaattgtcattacgtgtcattattgcggtgaagcggggcataaggtctca
cattgcgccaaaatgcctcaagagctgagagatcaacacgccttagcaggaggtggaaat
gacatgtatatgaataagagtaattatggttttgcaaacaatcgctccgaagagctacca
gccaataatacaaagaaatacaaaaaccttgatgaaatcatatgttacaaatgcggcgaa
gtgggccacttcgctaataagtgttctaaagggcatttggcctttctatctagtaataat
tcacaaattcaacaacgtatcaaggaacaacaacagcgctag
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