Lepeophtheirus salmonis (salmon louse): 121120375
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Entry
121120375 CDS
T08214
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121120375 (Mtr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121120375 (Mtr4)
03041 Spliceosome [BR:
lsm03041
]
121120375 (Mtr4)
03009 Ribosome biogenesis [BR:
lsm03009
]
121120375 (Mtr4)
03016 Transfer RNA biogenesis [BR:
lsm03016
]
121120375 (Mtr4)
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121120375 (Mtr4)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
121120375 (Mtr4)
Spliceosome [BR:
lsm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121120375 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
121120375 (Mtr4)
Ribosome biogenesis [BR:
lsm03009
]
Eukaryotic type
Pre-60S particles
Helicases
121120375 (Mtr4)
Transfer RNA biogenesis [BR:
lsm03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
121120375 (Mtr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
DBC1
Motif
Other DBs
NCBI-GeneID:
121120375
NCBI-ProteinID:
XP_040571158
LinkDB
All DBs
Position
6:27788171..27791825
Genome browser
AA seq
996 aa
AA seq
DB search
MRFWGSNKRTGSPVDKDEAGSADLKRSKIEEEAEGDNALSLVESAPRIRIQSLEGMVGCT
HEVALPPGQDYIPLSPLKSNPYKTYAFALDSFQTQAIACIENNQSVLVSAHTSAGKTVTA
EYAIALSLKEKQRVIYTTPIKALSNQKYREFYEEFSDVGLMTGDVTINPMASCLIMTTEI
LRSMLYRGSEIMREVGWVIFDEIHYMRDSERGVVWEETIILLPDNVHCVFLSATIPNARQ
FVEWIAHLHNQPCHVVYTDYRPTPLQHYIFPSGGDGIHLVVDEFGVFKEDNFNQAMSVLQ
NAIGDSGAGDKKGKKGGMKPQNNCYKIVKMIMERNFAPVIVFSFSKKECEAYALQMAKLD
FNSAEEKKLVDEVFQNAMMVLSEEDRALPQVENVLPLLKRGIGIHHGGLLPILKETVEIL
FGEGLIKALFATETFAMGLNMPARTVLFTGTQKFDGKDFRWIRSGEYIQMSGRAGRRGLD
DKGIVILMVDEKMAPSVGKNIVKGLPDPINSAFHLTYNMVLNLLRVEEINPEYMMERSFH
QFQNYSNIPKLYEKTKSLEQKLEEIKISDEEEIASYYSLKEQLKNMSNEFHSWLIKPQYI
VPFLQSGRLISVKHGTKDFGFGAVVNFRKLSGDKKQNPSLEASQNLVYIIDILLHVTKET
SKCKSTYDLEPAPHNTKGEMVVVSIKLELVQKISSVRIFMPKDIRPIENRCSVLKSIQQV
SKRFGSEIPLLDPIKEMMIGDKDFKNIIKKISTFEKRLLSHPLSGNPQLNTILEEYGSKV
ELQKSCESAREELKKAKSLLQMSDLKCMKRVLRRLDYCSSADVIEMKGRIACELGTADEL
LLTEMIFNGVFQPLTHAQCAAILSCFVFDEKSDCMPKLTEELSGPLRQMQDLARRIAKVS
KEAKIEIEEDEYVEKFKPYMMDVVHAWCKGASFATVIKMTDIFEGSIIRCMRRLEELLRQ
MVQASKNIGNTELENKFSEAIKLLKRDIVFAASLYL
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgagattttggggtagtaacaagcggacgggatccccagttgacaaagatgaagccggg
tctgccgacctaaaacgctctaaaatagaagaagaggctgaaggcgacaatgctttgtcc
ttggtggaatccgctccacggattcgtattcagtccctggaaggaatggtgggatgtact
cacgaagtggctcttcctccgggacaagattatattcccctttctcccttaaagtccaat
ccgtacaaaacttatgccttcgctttagattcttttcaaacacaagccattgcatgcatt
gagaacaatcagtctgtactcgtctcagcgcacacttccgcgggaaaaaccgtgactgca
gaatatgcaatcgctctttctctcaaagaaaaacaaagggttatttataccacacccatc
aaagctctttcaaatcaaaagtatcgagagttctatgaagagttttctgatgtcggactc
atgactggagatgtcaccatcaatcccatggcatcttgtcttatcatgacgacggaaatt
ctacggagcatgttgtatagagggtctgaaattatgagggaagtgggatgggttattttt
gatgaaatccattatatgagagattcggagagaggagtcgtttgggaggagactatcatt
ctcttaccggataatgtacattgtgtatttttatctgctaccattcctaatgctaggcaa
tttgtcgagtggatcgcgcatttgcacaatcaaccgtgccatgttgtatacaccgactat
agaccaactcctcttcaacattatattttcccttctggaggagatggaattcatctggtt
gtggatgaatttggtgtattcaaggaggataatttcaatcaagctatgtctgtccttcaa
aacgctattggagattcaggtgctggtgataaaaaggggaaaaaaggtggaatgaaacca
caaaacaactgttacaaaattgtcaagatgataatggaacgtaattttgcacccgtgatt
gttttttcatttagtaaaaaagaatgtgaagcttacgcactccaaatggccaaattagat
tttaatagtgctgaagagaaaaaactcgtggacgaagtctttcaaaatgcaatgatggtt
ttatcggaagaagatcgtgctctaccccaagtagagaatgtacttccccttcttaaacgt
gggattggtatacatcacggaggattactccctattttgaaagaaactgtcgaaattctt
tttggcgaaggacttattaaagccttatttgccacagaaacatttgctatgggcttaaat
atgccagcaagaacagttttgtttacagggactcagaaatttgatggaaaagattttaga
tggataagaagtggagaatatattcaaatgtctggacgtgctggtcgtagaggtttagat
gacaaaggtatagttattctaatggtagatgagaaaatggctccgtccgttggaaagaat
atcgttaaaggtctgcctgacccaattaactcggcttttcatctcacttataatatggta
ctgaatcttctaagagttgaagaaatcaatcctgaatacatgatggagcggagttttcat
caatttcaaaattattcaaatattccaaaattatatgaaaaaacgaaaagtctagaacaa
aaactcgaagaaattaagatttcagatgaagaagaaatcgcatcttattatagtcttaaa
gagcaattgaagaatatgagtaatgaatttcattcttggttaattaaaccccaatatatt
gtaccttttttacaatctgggcgacttatttctgtcaagcacggaacaaaagactttgga
tttggcgccgttgttaactttcgaaaattatctggtgataaaaagcaaaacccaagttta
gaagcaagtcaaaacctagtttatatcattgatattcttcttcacgtaactaaagaaact
tccaaatgtaaatccacttatgatttggagcctgcgcctcacaataccaagggagaaatg
gtagttgtatccattaagctggaactcgttcaaaagatatcaagtgtcaggatatttatg
cctaaagatattcgaccaattgaaaatcgttgttctgtattaaaaagcattcagcaagta
tcaaaacgatttggaagcgaaatacctttacttgatccaatcaaagaaatgatgattggg
gacaaagactttaaaaatataatcaagaaaatatcaacatttgaaaaaagactcttatct
catcctttgagcggtaatcctcagttaaatactattttagaggagtatggaagcaaagtt
gagctccaaaaatcttgtgagtctgctcgagaggaacttaaaaaagctaaaagtctgcta
caaatgtcggatctgaaatgtatgaaacgagttcttagacggctggactattgctcttca
gcggatgttattgaaatgaagggtcgaatcgcttgtgaattggggacggcggatgaactc
cttttgacggaaatgatttttaatggtgtgttccaacctcttactcatgctcaatgcgct
gctattctctcctgctttgtattcgatgaaaaatctgactgtatgccgaaattaacggaa
gagttaagcggccccttgagacaaatgcaggatttagctcgtaggatcgctaaagtctcc
aaagaagctaaaattgaaatcgaagaagatgagtatgttgaaaaatttaaaccctacatg
atggacgtcgttcatgcatggtgtaagggtgcttcatttgcgactgtgatcaaaatgacg
gatatttttgagggaagtataattcgatgtatgagaagattggaggagttactacgacag
atggttcaagcatcaaagaatattggtaatacagaactggagaacaaattttcggaagct
attaaattacttaaacgcgatattgtatttgctgctagtttatatctatag
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